Tested bidirectional architectural input
This commit is contained in:
parent
94ce159d44
commit
92c6368270
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Using Theano backend.
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WARNING (theano.sandbox.cuda): The cuda backend is deprecated and will be removed in the next release (v0.10). Please switch to the gpuarray backend. You can get more information about how to switch at this URL:
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https://github.com/Theano/Theano/wiki/Converting-to-the-new-gpu-back-end%28gpuarray%29
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WARNING (theano.sandbox.cuda): CUDA is installed, but device gpu is not available (error: Unable to get the number of gpus available: no CUDA-capable device is detected)
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WARNING (theano.tensor.blas): We did not found a dynamic library into the library_dir of the library we use for blas. If you use ATLAS, make sure to compile it with dynamics library.
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&( executable = "workbench.sh" )( stdout = "out.txt" )( stderr = "err.txt" )( cputime = "45000" )( walltime = "45000" )( memory = "12000" )( inputfiles = ( "workbench.py" ".412054917326" ) ( "prepare_data.py" ".422203461399818" ) ( "content_shuffle_vector.h5" "124536" ) ( "shuffle_vector_test.h5" "418608" ) ( "shuffle_vector_train.h5" "3443352" ) ( "shuffle_vector_validate.h5" "435920" ) ( "SlovarIJS_BESEDE_utf8.lex" "29360549" ) ( "40_epoch.h5" ".04294967295" ) ( "40_epoch_history.pkl" ".04294967295" ) ( "notes" ".791623890922" ) ( "workbench.sh" ".1433001277835" ) )( executables = "workbench.sh" )( outputfiles = ( "40_epoch.h5" "" ) ( "workbench.py" "" ) ( "workbench.sh" "" ) ( "40_epoch_history.pkl" "" ) ( "notes" "" ) ( "out.txt" "" ) ( "err.txt" "" ) ( "gmlog" "" ) )( queue = "gridlong_nsc" )( runtimeenvironment = "APPS/BASE/THEANO-GPU-0.9" )( gmlog = "gmlog" )( jobname = "accetuation_nn" )( action = "request" )( clientsoftware = "libarccompute-5.0.5" )( clientxrsl = "&( jobname = ""accetuation_nn"" )( executable = ""workbench.sh"" )( inputfiles = ( ""workbench.py"" """" ) ( ""prepare_data.py"" """" ) ( ""content_shuffle_vector.h5"" ""cnn/internal_representations/inputs/content_shuffle_vector.h5"" ) ( ""shuffle_vector_test.h5"" ""cnn/internal_representations/inputs/shuffle_vector_test.h5"" ) ( ""shuffle_vector_train.h5"" ""cnn/internal_representations/inputs/shuffle_vector_train.h5"" ) ( ""shuffle_vector_validate.h5"" ""cnn/internal_representations/inputs/shuffle_vector_validate.h5"" ) ( ""SlovarIJS_BESEDE_utf8.lex"" ""data/SlovarIJS_BESEDE_utf8.lex"" ) ( ""40_epoch.h5"" """" ) ( ""40_epoch_history.pkl"" """" ) ( ""notes"" """" ) )( outputfiles = ( ""40_epoch.h5"" """" ) ( ""workbench.py"" """" ) ( ""workbench.sh"" """" ) ( ""40_epoch_history.pkl"" """" ) ( ""notes"" """" ) )( stdout = ""out.txt"" )( stderr = ""err.txt"" )( gmlog = ""gmlog"" )( runtimeenvironment = ""APPS/BASE/THEANO-GPU-0.9"" )( gridtime = ""750"" )( memory = ""12000"" )" )( hostname = "luka-laptop" )( savestate = "yes" )
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runtimeenvironments=APPS/BASE/THEANO-GPU-0.9;
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nodename=nsc-fp006.ijs.si
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WallTime=45010s
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Processors=1
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UserTime=45010s
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LRMSStartTime=20170906082225Z
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LRMSEndTime=20170906205235Z
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2017-09-06T08:21:51Z Job state change UNDEFINED -> ACCEPTED Reason: (Re)Accepting new job
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2017-09-06T08:21:51Z Job state change ACCEPTED -> PREPARING Reason: Starting job processing
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2017-09-06T08:22:24Z Job state change PREPARING -> SUBMIT Reason: Pre-staging finished, passing job to LRMS
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----- starting submit_slurm_job -----
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SLURM jobname: accetuation_nn
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SLURM job script built
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SLURM script follows:
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-------------------------------------------------------------------
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#!/bin/bash -l
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# SLURM batch job script built by grid-manager
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#SBATCH --no-requeue
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#SBATCH -e /net/hold/data1/arc/session//e1PMDmzlk9qnOeFSGmVnjcgoABFKDmABFKDmZmMKDmABFKDmnXN6sm.comment
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#SBATCH -o /net/hold/data1/arc/session//e1PMDmzlk9qnOeFSGmVnjcgoABFKDmABFKDmZmMKDmABFKDmnXN6sm.comment
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#SBATCH -p gridlong
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#SBATCH --nice=50
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#SBATCH -J 'accetuation_nn'
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#SBATCH --get-user-env=10L
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#SBATCH -n 1
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#SBATCH --constraint=gpu --gres=gpu:1
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#SBATCH -t 750:0
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#SBATCH -t 750:0
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#SBATCH --mem-per-cpu=12000
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# run singularity image if RTE with singularity is required
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if [ -z $SINGULARITY_CONTAINER ]; then
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exec /bin/singularity exec -B /var/spool/slurm,/cvmfs,/net/hold/data1,/data1,/data1/slurm,/home,/usr/lib64/nvidia /net/hold/data1/singularity-images/theano-gpu-2.img $0
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fi
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# Overide umask of execution node (sometime values are really strange)
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umask 077
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# source with arguments for DASH shells
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sourcewithargs() {
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script=$1
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shift
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. $script
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}
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# Setting environment variables as specified by user
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export 'GRID_GLOBAL_JOBID=gsiftp://nsc.ijs.si:2811/jobs/e1PMDmzlk9qnOeFSGmVnjcgoABFKDmABFKDmZmMKDmABFKDmnXN6sm'
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RUNTIME_JOB_DIR=/net/hold/data1/arc/session//e1PMDmzlk9qnOeFSGmVnjcgoABFKDmABFKDmZmMKDmABFKDmnXN6sm
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RUNTIME_JOB_STDIN=/dev/null
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RUNTIME_JOB_STDOUT=/net/hold/data1/arc/session//e1PMDmzlk9qnOeFSGmVnjcgoABFKDmABFKDmZmMKDmABFKDmnXN6sm/out.txt
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RUNTIME_JOB_STDERR=/net/hold/data1/arc/session//e1PMDmzlk9qnOeFSGmVnjcgoABFKDmABFKDmZmMKDmABFKDmnXN6sm/err.txt
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RUNTIME_JOB_DIAG=/net/hold/data1/arc/session//e1PMDmzlk9qnOeFSGmVnjcgoABFKDmABFKDmZmMKDmABFKDmnXN6sm.diag
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if [ ! -z "$RUNTIME_GRIDAREA_DIR" ] ; then
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RUNTIME_JOB_DIR=$RUNTIME_GRIDAREA_DIR/`basename $RUNTIME_JOB_DIR`
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RUNTIME_JOB_STDIN=`echo "$RUNTIME_JOB_STDIN" | sed "s#^$RUNTIME_JOB_DIR#$RUNTIME_GRIDAREA_DIR#"`
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RUNTIME_JOB_STDOUT=`echo "$RUNTIME_JOB_STDOUT" | sed "s#^$RUNTIME_JOB_DIR#$RUNTIME_GRIDAREA_DIR#"`
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RUNTIME_JOB_STDERR=`echo "$RUNTIME_JOB_STDERR" | sed "s#^$RUNTIME_JOB_DIR#$RUNTIME_GRIDAREA_DIR#"`
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RUNTIME_JOB_DIAG=`echo "$RUNTIME_JOB_DIAG" | sed "s#^$RUNTIME_JOB_DIR#$RUNTIME_GRIDAREA_DIR#"`
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RUNTIME_CONTROL_DIR=`echo "$RUNTIME_CONTROL_DIR" | sed "s#^$RUNTIME_JOB_DIR#$RUNTIME_GRIDAREA_DIR#"`
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fi
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RUNTIME_LOCAL_SCRATCH_DIR=${RUNTIME_LOCAL_SCRATCH_DIR:-$WORKDIR}
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RUNTIME_FRONTEND_SEES_NODE=${RUNTIME_FRONTEND_SEES_NODE:-}
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RUNTIME_NODE_SEES_FRONTEND=${RUNTIME_NODE_SEES_FRONTEND:-yes}
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if [ ! -z "$RUNTIME_LOCAL_SCRATCH_DIR" ] && [ ! -z "$RUNTIME_NODE_SEES_FRONTEND" ]; then
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RUNTIME_NODE_JOB_DIR="$RUNTIME_LOCAL_SCRATCH_DIR"/`basename "$RUNTIME_JOB_DIR"`
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rm -rf "$RUNTIME_NODE_JOB_DIR"
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mkdir -p "$RUNTIME_NODE_JOB_DIR"
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# move directory contents
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for f in "$RUNTIME_JOB_DIR"/.* "$RUNTIME_JOB_DIR"/*; do
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[ "$f" = "$RUNTIME_JOB_DIR/*" ] && continue # glob failed, no files
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[ "$f" = "$RUNTIME_JOB_DIR/." ] && continue
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[ "$f" = "$RUNTIME_JOB_DIR/.." ] && continue
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[ "$f" = "$RUNTIME_JOB_DIR/.diag" ] && continue
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[ "$f" = "$RUNTIME_JOB_DIR/.comment" ] && continue
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if ! mv "$f" "$RUNTIME_NODE_JOB_DIR"; then
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echo "Failed to move '$f' to '$RUNTIME_NODE_JOB_DIR'" 1>&2
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exit 1
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fi
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done
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if [ ! -z "$RUNTIME_FRONTEND_SEES_NODE" ] ; then
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# creating link for whole directory
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ln -s "$RUNTIME_FRONTEND_SEES_NODE"/`basename "$RUNTIME_JOB_DIR"` "$RUNTIME_JOB_DIR"
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else
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# keep stdout, stderr and control directory on frontend
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# recreate job directory
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mkdir -p "$RUNTIME_JOB_DIR"
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# make those files
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mkdir -p `dirname "$RUNTIME_JOB_STDOUT"`
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mkdir -p `dirname "$RUNTIME_JOB_STDERR"`
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touch "$RUNTIME_JOB_STDOUT"
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touch "$RUNTIME_JOB_STDERR"
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RUNTIME_JOB_STDOUT__=`echo "$RUNTIME_JOB_STDOUT" | sed "s#^${RUNTIME_JOB_DIR}#${RUNTIME_NODE_JOB_DIR}#"`
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RUNTIME_JOB_STDERR__=`echo "$RUNTIME_JOB_STDERR" | sed "s#^${RUNTIME_JOB_DIR}#${RUNTIME_NODE_JOB_DIR}#"`
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rm "$RUNTIME_JOB_STDOUT__" 2>/dev/null
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rm "$RUNTIME_JOB_STDERR__" 2>/dev/null
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if [ ! -z "$RUNTIME_JOB_STDOUT__" ] && [ "$RUNTIME_JOB_STDOUT" != "$RUNTIME_JOB_STDOUT__" ]; then
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ln -s "$RUNTIME_JOB_STDOUT" "$RUNTIME_JOB_STDOUT__"
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fi
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if [ "$RUNTIME_JOB_STDOUT__" != "$RUNTIME_JOB_STDERR__" ] ; then
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if [ ! -z "$RUNTIME_JOB_STDERR__" ] && [ "$RUNTIME_JOB_STDERR" != "$RUNTIME_JOB_STDERR__" ]; then
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ln -s "$RUNTIME_JOB_STDERR" "$RUNTIME_JOB_STDERR__"
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fi
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fi
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if [ ! -z "$RUNTIME_CONTROL_DIR" ] ; then
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# move control directory back to frontend
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RUNTIME_CONTROL_DIR__=`echo "$RUNTIME_CONTROL_DIR" | sed "s#^${RUNTIME_JOB_DIR}#${RUNTIME_NODE_JOB_DIR}#"`
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mv "$RUNTIME_CONTROL_DIR__" "$RUNTIME_CONTROL_DIR"
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fi
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fi
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# adjust stdin,stdout & stderr pointers
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RUNTIME_JOB_STDIN=`echo "$RUNTIME_JOB_STDIN" | sed "s#^${RUNTIME_JOB_DIR}#${RUNTIME_NODE_JOB_DIR}#"`
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RUNTIME_JOB_STDOUT=`echo "$RUNTIME_JOB_STDOUT" | sed "s#^${RUNTIME_JOB_DIR}#${RUNTIME_NODE_JOB_DIR}#"`
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RUNTIME_JOB_STDERR=`echo "$RUNTIME_JOB_STDERR" | sed "s#^${RUNTIME_JOB_DIR}#${RUNTIME_NODE_JOB_DIR}#"`
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RUNTIME_FRONTEND_JOB_DIR="$RUNTIME_JOB_DIR"
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RUNTIME_JOB_DIR="$RUNTIME_NODE_JOB_DIR"
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fi
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if [ -z "$RUNTIME_NODE_SEES_FRONTEND" ] ; then
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mkdir -p "$RUNTIME_JOB_DIR"
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fi
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RESULT=0
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if [ "$RESULT" = '0' ] ; then
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# Running runtime scripts
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export RUNTIME_CONFIG_DIR=${RUNTIME_CONFIG_DIR:-/net/hold/data1/arc/runtime/}
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runtimeenvironments=
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if [ ! -z "$RUNTIME_CONFIG_DIR" ] ; then
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if [ -r "${RUNTIME_CONFIG_DIR}/APPS/BASE/THEANO-GPU-0.9" ] ; then
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runtimeenvironments="${runtimeenvironments}APPS/BASE/THEANO-GPU-0.9;"
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cmdl=${RUNTIME_CONFIG_DIR}/APPS/BASE/THEANO-GPU-0.9
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sourcewithargs $cmdl 1
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if [ $? -ne '0' ] ; then
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echo "Runtime APPS/BASE/THEANO-GPU-0.9 script failed " 1>&2
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echo "Runtime APPS/BASE/THEANO-GPU-0.9 script failed " 1>"$RUNTIME_JOB_DIAG"
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exit 1
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fi
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fi
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fi
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echo "runtimeenvironments=$runtimeenvironments" >> "$RUNTIME_JOB_DIAG"
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if [ ! "X$SLURM_NODEFILE" = 'X' ] ; then
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if [ -r "$SLURM_NODEFILE" ] ; then
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cat "$SLURM_NODEFILE" | sed 's/\(.*\)/nodename=\1/' >> "$RUNTIME_JOB_DIAG"
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NODENAME_WRITTEN="1"
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else
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SLURM_NODEFILE=
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fi
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fi
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if [ "$RESULT" = '0' ] ; then
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# Changing to session directory
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HOME=$RUNTIME_JOB_DIR
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export HOME
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if ! cd "$RUNTIME_JOB_DIR"; then
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echo "Failed to switch to '$RUNTIME_JOB_DIR'" 1>&2
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RESULT=1
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fi
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if [ ! -z "$RESULT" ] && [ "$RESULT" != 0 ]; then
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exit $RESULT
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fi
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nodename=`/bin/hostname -f`
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echo "nodename=$nodename" >> "$RUNTIME_JOB_DIAG"
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echo "Processors=1" >> "$RUNTIME_JOB_DIAG"
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executable='./workbench.sh'
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# Check if executable exists
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if [ ! -f "$executable" ];
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then
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echo "Path \"$executable\" does not seem to exist" 1>$RUNTIME_JOB_STDOUT 2>$RUNTIME_JOB_STDERR 1>&2
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exit 1
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fi
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# See if executable is a script, and extract the name of the interpreter
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line1=`dd if="$executable" count=1 2>/dev/null | head -n 1`
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command=`echo $line1 | sed -n 's/^#! *//p'`
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interpreter=`echo $command | awk '{print $1}'`
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if [ "$interpreter" = /usr/bin/env ]; then interpreter=`echo $command | awk '{print $2}'`; fi
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# If it's a script and the interpreter is not found ...
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[ "x$interpreter" = x ] || type "$interpreter" > /dev/null 2>&1 || {
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echo "Cannot run $executable: $interpreter: not found" 1>$RUNTIME_JOB_STDOUT 2>$RUNTIME_JOB_STDERR 1>&2
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exit 1; }
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GNU_TIME='/usr/bin/time'
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if [ ! -z "$GNU_TIME" ] && ! "$GNU_TIME" --version >/dev/null 2>&1; then
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echo "WARNING: GNU time not found at: $GNU_TIME" 2>&1;
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GNU_TIME=
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fi
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if [ -z "$GNU_TIME" ] ; then
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"./workbench.sh" <$RUNTIME_JOB_STDIN 1>$RUNTIME_JOB_STDOUT 2>$RUNTIME_JOB_STDERR
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else
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$GNU_TIME -o "$RUNTIME_JOB_DIAG" -a -f 'WallTime=%es\nKernelTime=%Ss\nUserTime=%Us\nCPUUsage=%P\nMaxResidentMemory=%MkB\nAverageResidentMemory=%tkB\nAverageTotalMemory=%KkB\nAverageUnsharedMemory=%DkB\nAverageUnsharedStack=%pkB\nAverageSharedMemory=%XkB\nPageSize=%ZB\nMajorPageFaults=%F\nMinorPageFaults=%R\nSwaps=%W\nForcedSwitches=%c\nWaitSwitches=%w\nInputs=%I\nOutputs=%O\nSocketReceived=%r\nSocketSent=%s\nSignals=%k\n' "./workbench.sh" <$RUNTIME_JOB_STDIN 1>$RUNTIME_JOB_STDOUT 2>$RUNTIME_JOB_STDERR
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fi
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RESULT=$?
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fi
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fi
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if [ ! -z "$RUNTIME_CONFIG_DIR" ] ; then
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if [ -r "${RUNTIME_CONFIG_DIR}/APPS/BASE/THEANO-GPU-0.9" ] ; then
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cmdl=${RUNTIME_CONFIG_DIR}/APPS/BASE/THEANO-GPU-0.9
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sourcewithargs $cmdl 2
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fi
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fi
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if [ ! -z "$RUNTIME_LOCAL_SCRATCH_DIR" ] ; then
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find ./ -type l -exec rm -f "{}" ";"
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find ./ -type f -exec chmod u+w "{}" ";"
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chmod -R u-w "$RUNTIME_JOB_DIR"/'40_epoch.h5' 2>/dev/null
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chmod -R u-w "$RUNTIME_JOB_DIR"/'workbench.py' 2>/dev/null
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chmod -R u-w "$RUNTIME_JOB_DIR"/'workbench.sh' 2>/dev/null
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chmod -R u-w "$RUNTIME_JOB_DIR"/'40_epoch_history.pkl' 2>/dev/null
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chmod -R u-w "$RUNTIME_JOB_DIR"/'notes' 2>/dev/null
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chmod -R u-w "$RUNTIME_JOB_DIR"/'out.txt' 2>/dev/null
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chmod -R u-w "$RUNTIME_JOB_DIR"/'err.txt' 2>/dev/null
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chmod -R u-w "$RUNTIME_JOB_DIR"/'gmlog' 2>/dev/null
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find ./ -type f -perm /200 -exec rm -f "{}" ";"
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find ./ -type f -exec chmod u+w "{}" ";"
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fi
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if [ ! -z "$RUNTIME_LOCAL_SCRATCH_DIR" ] && [ ! -z "$RUNTIME_NODE_SEES_FRONTEND" ]; then
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if [ ! -z "$RUNTIME_FRONTEND_SEES_NODE" ] ; then
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# just move it
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rm -rf "$RUNTIME_FRONTEND_JOB_DIR"
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destdir=`dirname "$RUNTIME_FRONTEND_JOB_DIR"`
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if ! mv "$RUNTIME_NODE_JOB_DIR" "$destdir"; then
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echo "Failed to move '$RUNTIME_NODE_JOB_DIR' to '$destdir'" 1>&2
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RESULT=1
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fi
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else
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# remove links
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rm -f "$RUNTIME_JOB_STDOUT" 2>/dev/null
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rm -f "$RUNTIME_JOB_STDERR" 2>/dev/null
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# move directory contents
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for f in "$RUNTIME_NODE_JOB_DIR"/.* "$RUNTIME_NODE_JOB_DIR"/*; do
|
|
||||||
[ "$f" = "$RUNTIME_NODE_JOB_DIR/*" ] && continue # glob failed, no files
|
|
||||||
[ "$f" = "$RUNTIME_NODE_JOB_DIR/." ] && continue
|
|
||||||
[ "$f" = "$RUNTIME_NODE_JOB_DIR/.." ] && continue
|
|
||||||
[ "$f" = "$RUNTIME_NODE_JOB_DIR/.diag" ] && continue
|
|
||||||
[ "$f" = "$RUNTIME_NODE_JOB_DIR/.comment" ] && continue
|
|
||||||
if ! mv "$f" "$RUNTIME_FRONTEND_JOB_DIR"; then
|
|
||||||
echo "Failed to move '$f' to '$RUNTIME_FRONTEND_JOB_DIR'" 1>&2
|
|
||||||
RESULT=1
|
|
||||||
fi
|
|
||||||
done
|
|
||||||
rm -rf "$RUNTIME_NODE_JOB_DIR"
|
|
||||||
fi
|
|
||||||
fi
|
|
||||||
echo "exitcode=$RESULT" >> "$RUNTIME_JOB_DIAG"
|
|
||||||
exit $RESULT
|
|
||||||
-------------------------------------------------------------------
|
|
||||||
|
|
||||||
job submitted successfully!
|
|
||||||
local job id: 734035
|
|
||||||
----- exiting submit_slurm_job -----
|
|
||||||
|
|
||||||
2017-09-06T08:22:24Z Job state change SUBMIT -> INLRMS Reason: Job is passed to LRMS
|
|
||||||
------- Contents of output stream forwarded by the LRMS ---------
|
|
||||||
WARNING: GNU time not found at: /usr/bin/time
|
|
||||||
slurmstepd: error: *** JOB 734035 ON nsc-fp006 CANCELLED AT 2017-09-06T22:52:34 DUE TO TIME LIMIT ***
|
|
||||||
------------------------- End of output -------------------------
|
|
||||||
2017-09-06T20:55:12Z Job state change INLRMS -> FINISHING Reason: Job finished executing in LRMS
|
|
||||||
2017-09-06T20:56:12Z Job state change FINISHING -> FINISHED Reason: Stage-out finished.
|
|
||||||
2017-09-06T21:49:02Z Job state change UNDEFINED -> FINISHED Reason: (Re)Accepting new job
|
|
||||||
2017-09-06T23:49:20Z Job state change UNDEFINED -> FINISHED Reason: (Re)Accepting new job
|
|
||||||
2017-09-07T01:49:53Z Job state change UNDEFINED -> FINISHED Reason: (Re)Accepting new job
|
|
||||||
2017-09-07T03:50:36Z Job state change UNDEFINED -> FINISHED Reason: (Re)Accepting new job
|
|
||||||
2017-09-07T05:50:39Z Job state change UNDEFINED -> FINISHED Reason: (Re)Accepting new job
|
|
||||||
2017-09-07T07:50:54Z Job state change UNDEFINED -> FINISHED Reason: (Re)Accepting new job
|
|
||||||
|
|
@ -1,39 +0,0 @@
|
||||||
joboption_directory='/net/hold/data1/arc/session//e1PMDmzlk9qnOeFSGmVnjcgoABFKDmABFKDmZmMKDmABFKDmnXN6sm'
|
|
||||||
joboption_controldir='/var/spool/arc/jobstatus/'
|
|
||||||
joboption_arg_0='./workbench.sh'
|
|
||||||
joboption_stdin='/dev/null'
|
|
||||||
joboption_stdout='/net/hold/data1/arc/session//e1PMDmzlk9qnOeFSGmVnjcgoABFKDmABFKDmZmMKDmABFKDmnXN6sm/out.txt'
|
|
||||||
joboption_stderr='/net/hold/data1/arc/session//e1PMDmzlk9qnOeFSGmVnjcgoABFKDmABFKDmZmMKDmABFKDmnXN6sm/err.txt'
|
|
||||||
joboption_env_0=GRID_GLOBAL_JOBID='gsiftp://nsc.ijs.si:2811/jobs/e1PMDmzlk9qnOeFSGmVnjcgoABFKDmABFKDmZmMKDmABFKDmnXN6sm'
|
|
||||||
joboption_cputime=45000
|
|
||||||
joboption_walltime=45000
|
|
||||||
joboption_memory=12000
|
|
||||||
joboption_virtualmemory=
|
|
||||||
joboption_disk=
|
|
||||||
joboption_count=1
|
|
||||||
joboption_runtime_0='APPS/BASE/THEANO-GPU-0.9'
|
|
||||||
joboption_jobname='accetuation_nn'
|
|
||||||
joboption_queue='gridlong'
|
|
||||||
joboption_starttime=
|
|
||||||
joboption_gridid='e1PMDmzlk9qnOeFSGmVnjcgoABFKDmABFKDmZmMKDmABFKDmnXN6sm'
|
|
||||||
joboption_priority=50
|
|
||||||
joboption_inputfile_0='/workbench.py'
|
|
||||||
joboption_inputfile_1='/prepare_data.py'
|
|
||||||
joboption_inputfile_2='/content_shuffle_vector.h5'
|
|
||||||
joboption_inputfile_3='/shuffle_vector_test.h5'
|
|
||||||
joboption_inputfile_4='/shuffle_vector_train.h5'
|
|
||||||
joboption_inputfile_5='/shuffle_vector_validate.h5'
|
|
||||||
joboption_inputfile_6='/SlovarIJS_BESEDE_utf8.lex'
|
|
||||||
joboption_inputfile_7='/40_epoch.h5'
|
|
||||||
joboption_inputfile_8='/40_epoch_history.pkl'
|
|
||||||
joboption_inputfile_9='/notes'
|
|
||||||
joboption_inputfile_10='/workbench.sh'
|
|
||||||
joboption_outputfile_0='/40_epoch.h5'
|
|
||||||
joboption_outputfile_1='/workbench.py'
|
|
||||||
joboption_outputfile_2='/workbench.sh'
|
|
||||||
joboption_outputfile_3='/40_epoch_history.pkl'
|
|
||||||
joboption_outputfile_4='/notes'
|
|
||||||
joboption_outputfile_5='/out.txt'
|
|
||||||
joboption_outputfile_6='/err.txt'
|
|
||||||
joboption_outputfile_7='/gmlog'
|
|
||||||
joboption_jobid=734035
|
|
||||||
|
|
@ -1,26 +0,0 @@
|
||||||
globalid=gsiftp://nsc.ijs.si:2811/jobs/e1PMDmzlk9qnOeFSGmVnjcgoABFKDmABFKDmZmMKDmABFKDmnXN6sm
|
|
||||||
headnode=gsiftp://nsc.ijs.si:2811/jobs
|
|
||||||
interface=org.nordugrid.gridftpjob
|
|
||||||
lrms=SLURM
|
|
||||||
queue=gridlong
|
|
||||||
localid=734035
|
|
||||||
args=workbench.sh
|
|
||||||
argscode=0
|
|
||||||
subject=/C=SI/O=SiGNET/O=FRI Uni-Lj/CN=Luka Krsnik
|
|
||||||
starttime=20170906082151Z
|
|
||||||
lifetime=604800
|
|
||||||
rerun=0
|
|
||||||
downloads=0
|
|
||||||
uploads=0
|
|
||||||
jobname=accetuation_nn
|
|
||||||
gmlog=gmlog
|
|
||||||
cleanuptime=20170913205612Z
|
|
||||||
delegexpiretime=20170906200810Z
|
|
||||||
clientname=88.200.99.117:59172
|
|
||||||
delegationid=b01f4f77dbc8
|
|
||||||
sessiondir=/net/hold/data1/arc/session//e1PMDmzlk9qnOeFSGmVnjcgoABFKDmABFKDmZmMKDmABFKDmnXN6sm
|
|
||||||
diskspace=0
|
|
||||||
freestagein=no
|
|
||||||
voms=/gen.vo.sling.si
|
|
||||||
transfershare=_default
|
|
||||||
priority=50
|
|
||||||
|
|
@ -1,8 +0,0 @@
|
||||||
/40_epoch.h5
|
|
||||||
/workbench.py
|
|
||||||
/workbench.sh
|
|
||||||
/40_epoch_history.pkl
|
|
||||||
/notes
|
|
||||||
/out.txt
|
|
||||||
/err.txt
|
|
||||||
/gmlog
|
|
||||||
|
|
@ -1,33 +0,0 @@
|
||||||
<ComputingActivity xmlns="http://schemas.ogf.org/glue/2009/03/spec_2.0_r1" BaseType="Activity" CreationTime="2017-09-07T07:51:22Z" Validity="10800">
|
|
||||||
<ID>urn:caid:nsc.ijs.si:org.nordugrid.gridftpjob:e1PMDmzlk9qnOeFSGmVnjcgoABFKDmABFKDmZmMKDmABFKDmnXN6sm</ID>
|
|
||||||
<Name>accetuation_nn</Name>
|
|
||||||
<OtherInfo>SubmittedVia=org.nordugrid.gridftpjob</OtherInfo>
|
|
||||||
<Type>single</Type>
|
|
||||||
<IDFromEndpoint>urn:idfe:e1PMDmzlk9qnOeFSGmVnjcgoABFKDmABFKDmZmMKDmABFKDmnXN6sm</IDFromEndpoint>
|
|
||||||
<JobDescription>nordugrid:xrsl</JobDescription>
|
|
||||||
<State>nordugrid:FINISHED</State>
|
|
||||||
<State>bes:Finished</State>
|
|
||||||
<State>emies:terminal</State>
|
|
||||||
<State>emiesattr:client-stageout-possible</State>
|
|
||||||
<Owner>/C=SI/O=SiGNET/O=FRI Uni-Lj/CN=Luka Krsnik</Owner>
|
|
||||||
<LocalOwner>gen0006</LocalOwner>
|
|
||||||
<RequestedTotalWallTime>45000</RequestedTotalWallTime>
|
|
||||||
<RequestedTotalCPUTime>45000</RequestedTotalCPUTime>
|
|
||||||
<RequestedSlots>1</RequestedSlots>
|
|
||||||
<RequestedApplicationEnvironment>APPS/BASE/THEANO-GPU-0.9</RequestedApplicationEnvironment>
|
|
||||||
<StdIn>/dev/null</StdIn>
|
|
||||||
<StdOut>out.txt</StdOut>
|
|
||||||
<StdErr>err.txt</StdErr>
|
|
||||||
<LogDir>gmlog</LogDir>
|
|
||||||
<ExecutionNode>nsc-fp006.ijs.si</ExecutionNode>
|
|
||||||
<Queue>gridlong</Queue>
|
|
||||||
<UsedTotalWallTime>45010</UsedTotalWallTime>
|
|
||||||
<SubmissionTime>2017-09-06T08:21:51Z</SubmissionTime>
|
|
||||||
<EndTime>2017-09-07T07:50:54Z</EndTime>
|
|
||||||
<WorkingAreaEraseTime>2017-09-13T20:56:12Z</WorkingAreaEraseTime>
|
|
||||||
<ProxyExpirationTime>2017-09-06T20:08:10Z</ProxyExpirationTime>
|
|
||||||
<SubmissionHost>88.200.99.117</SubmissionHost>
|
|
||||||
<Associations>
|
|
||||||
<ComputingShareID>urn:ogf:ComputingShare:nsc.ijs.si:gridlong</ComputingShareID>
|
|
||||||
</Associations>
|
|
||||||
</ComputingActivity>
|
|
||||||
|
|
@ -32,7 +32,7 @@ data.generate_data('letters_word_accetuation_bidirectional_train',
|
||||||
'letters_word_accetuation_bidirectional_test',
|
'letters_word_accetuation_bidirectional_test',
|
||||||
'letters_word_accetuation_bidirectional_validate', content_name='SlovarIJS_BESEDE_utf8.lex',
|
'letters_word_accetuation_bidirectional_validate', content_name='SlovarIJS_BESEDE_utf8.lex',
|
||||||
content_shuffle_vector='content_shuffle_vector', shuffle_vector='shuffle_vector',
|
content_shuffle_vector='content_shuffle_vector', shuffle_vector='shuffle_vector',
|
||||||
inputs_location='', content_location='')
|
inputs_location='cnn/internal_representations/inputs/', content_location='data/')
|
||||||
|
|
||||||
|
|
||||||
num_examples = len(data.x_train) # training set size
|
num_examples = len(data.x_train) # training set size
|
||||||
|
|
@ -84,10 +84,10 @@ model.compile(loss='binary_crossentropy', optimizer=opt, metrics=[actual_accurac
|
||||||
# model.compile(loss='mean_squared_error', optimizer='adam', metrics=['accuracy'])
|
# model.compile(loss='mean_squared_error', optimizer='adam', metrics=['accuracy'])
|
||||||
|
|
||||||
|
|
||||||
history = model.fit_generator(data.generator('train', batch_size, content_name='SlovarIJS_BESEDE_utf8.lex', content_location=''),
|
history = model.fit_generator(data.generator('train', batch_size, content_name='SlovarIJS_BESEDE_utf8.lex', content_location='data/'),
|
||||||
data.x_train.shape[0]/(batch_size * num_fake_epoch),
|
data.x_train.shape[0]/(batch_size * num_fake_epoch),
|
||||||
epochs=actual_epoch*num_fake_epoch,
|
epochs=actual_epoch*num_fake_epoch,
|
||||||
validation_data=data.generator('test', batch_size, content_name='SlovarIJS_BESEDE_utf8.lex', content_location=''),
|
validation_data=data.generator('test', batch_size, content_name='SlovarIJS_BESEDE_utf8.lex', content_location='data/'),
|
||||||
validation_steps=data.x_test.shape[0]/(batch_size * num_fake_epoch),
|
validation_steps=data.x_test.shape[0]/(batch_size * num_fake_epoch),
|
||||||
verbose=2
|
verbose=2
|
||||||
)
|
)
|
||||||
|
|
|
||||||
Loading…
Reference in New Issue
Block a user