Merge branch 'master' of gitea.cjvt.si:kristjan/cjvt-valency

.gitignore

@@ -1,3 +1,3 @@
 data/samples/
-*/__pycache__/
 *egg-info/
+*.pyc

Makefile

@@ -11,6 +11,9 @@ MAKE_ROOT = $(shell pwd)
 SSJ_FILE = "$(MAKE_ROOT)/data/samples/ssj_example/ssj500k-sl.body.sample.xml"
 KRES_FOLDER = "$(MAKE_ROOT)/data/samples/kres_example"
 KRES_SRL_FOLDER = "$(MAKE_ROOT)/data/kres_srl"
+OUTPUT = "file"
+OUTDIR = "/home/voje/workdir/test_out"
+DBADDR = ""
 export
 
 .PHONY: dev-env preflight
@@ -30,5 +33,5 @@ data/samples:
 # when debugging, run this once, then run python3 ... by hand
 preflight: data/samples
 	pip3 install -e src/pkg/corpusparser/.
-	python3 src/preflight/main_parse.py --kres-folder $(KRES_FOLDER) \
-		--ssj-file $(SSJ_FILE) --kres-srl-folder $(KRES_SRL_FOLDER)
+	python3 src/pkg/corpusparser/corpusparser/main.py --kres-folder $(KRES_FOLDER) \
+		--ssj-file $(SSJ_FILE) --kres-srl-folder $(KRES_SRL_FOLDER) --output $(OUTPUT) --outdir $(OUTDIR) --dbaddr $(DBADDR)

data/debugging/dbg.txt

@@ -0,0 +1,6 @@
+F0034713.20.1": [{"dep": "7", "arg": "REC", "from": "9"}, {"dep": "10", "arg": "ACT", "from": "9"}, {"dep": "13", "arg": "MWPRED", "from": "12"}, {"dep": "18", "arg": "MANN", "from": "19"}, {"dep": "20", "arg": "LOC", "from": "19"}]
+
+Sentence:
+F0034713.20.0
+1        2    3          4           5      6    7      8        9   10  11 12  13          14      15  16 17 18  19    20   21
+Sodobni ali preprosto neosveščeni potrošnik vse prerad zavrže stvar, ki se je malenkostno pokvarila in bi se jo zlahka dalo popraviti.

data/kres_srl

@@ -1 +1 @@
-/home/kristjan/kres_srl/final_json/
+/home/voje/work_data/final_json

data/kres_srl_ikt

@@ -0,0 +1 @@
+/home/voje/work_data/final_json

data/kres_srl_t420

@@ -0,0 +1 @@
+/home/kristjan/kres_srl/final_json/

src/pkg/corpusparser/corpusparser/Parser.py

@@ -1,14 +1,16 @@
-from corpusparser import Sentence
 from pathlib import Path
 import re
 import json
 from lxml import etree
+import logging
+
+logging.basicConfig(level=logging.INFO)
 
 # Read input file(.xml, .json; kres or ssj500k).  
 # Create an iterator that outputs resulting sentences (python dict format).  
 class Parser():
 
-    def __init__(self, corpus, infiles):
+    def __init__(self, corpus, infiles, logger=None):
 
         if corpus == "kres":
             self.kres_folder = Path(infiles[0])
@@ -22,6 +24,11 @@ class Parser():
         self.W_TAGS = ['w']
         self.C_TAGS = ['c']
         self.S_TAGS = ['S', 'pc']
+        self.logger = logger or logging.getLogger(__name__)
+        self.stats = {
+            "parsed_count": 0,
+            "missing_srl": []
+        }
 
     def parse_jos_links(self, sent_el):
         if self.corpus == "kres":
@@ -64,37 +71,40 @@ class Parser():
             }]
         return res_links
 
-    def parse_srl_links(self, sent_el, sent_srl_links):
+    def parse_srl_links(self, sent_el, sent_srl_links=None):
         if self.corpus == "kres":
             return self.parse_srl_links_kres(sent_el, sent_srl_links)
         else:
             return self.parse_any_links_ssj(sent_el, "SRL")
 
     def parse_srl_links_kres(self, sent_el, sent_srl_links):
-        print("HA")
-        if len(sent_srl_links) == 0:
-            print("HI")
-            return []
-        print(sent_srl_dict)
+        res_links = []
+        for link in sent_srl_links:
+            res_links += [{
+                "from": int(link["from"]),
+                "afun": link["arg"],
+                "to": int(link["dep"]),
+            }]
         # find the correspointing json file with srl links
-        return []
+        return res_links
 
-    def parse(self):
+    def sentence_generator(self):
+        # Using generators so we don't copy a whole corpu around in memory.
         if self.corpus == "kres":
             for xml_file in self.kres_folder.iterdir():
-                self.parse_xml_file(xml_file)
-                break  # TODO dev break
+                # self.parse_xml_file(xml_file)
+                yield from self.parse_xml_file(xml_file)
         else:
-            self.parse_xml_file(self.ssj_file)
+            yield from self.parse_xml_file(self.ssj_file)
 
     def parse_xml_file(self, xml_file):
-        srl_dict = {}
+        srl_from_json = {}
         if self.corpus == "kres":  
             # in case of kres, read the SRL links form a separate json file
             file_id = xml_file.name.split(".")[0]
             json_file = self.kres_srl_folder / Path(file_id).with_suffix(".srl.json")
             with json_file.open("r") as fp:
-                srl_dict = json.loads(fp.read())
+                srl_from_json = json.loads(fp.read())
 
         with xml_file.open("rb") as fp:
             # remove namespaces
@@ -112,7 +122,7 @@ class Parser():
         else:
             divs = root.findall(".//div")
 
-        res_dict = []  # TODO: try making an iterator instead
+        res_dict = {}
 
         # parse divs
         for div in divs:
@@ -150,7 +160,7 @@ class Parser():
                             sentence_text += el.text
                             sentence_tokens += [{
                                 "word": False,
-                                "tid": el_id,
+                                "tid": (int(el_id) if self.corpus == "kres" else -1),
                                 "text": el.text,
                             }]
                         elif el.tag in self.S_TAGS:
@@ -161,22 +171,26 @@ class Parser():
                             pass
                     sentence_id = "{}.{}.{}".format(f_id, p_id, s_id)
 
-                    # make a generator instead of holding the whole corpus in memory
-                    if sentence_id in res_dict:
-                        raise KeyError("duplicated id: {}".format(sentence_id))
                     jos_links = self.parse_jos_links(s)
-                    srl_links = srl_dict.get(sentence_id) if self.corpus == "kres" else None
-                    srl_links_fixed = self.parse_srl_links(s, srl_links)
-                    print(srl_links)
-                    res_dict[sentence_id] = {
+
+                    if self.corpus == "kres":
+                        srl_links_raw = srl_from_json.get(sentence_id)
+                        if srl_links_raw is None:
+                            srl_links_parsed = None
+                            self.stats["missing_srl"] += [(sentence_id, sentence_text)]
+                        else:
+                            srl_links_parsed = self.parse_srl_links(s, srl_links_raw)
+                    else:
+                        srl_links_parsed = self.parse_srl_links(s)
+                        if len(srl_links_parsed) == 0:
+                            self.stats["missing_srl"] += [(sentence_id, sentence_text)]
+
+                    sentence_entry = {
                         "sid": sentence_id,
                         "text": sentence_text,
                         "tokens": sentence_tokens,
-                        "jos_links": "BBBB",
-                        "srl_links": "AAAAA",
+                        "jos_links": jos_links,
+                        "srl_links": srl_links_parsed
                     }
-
-                    print(res_dict[sentence_id])
-                    print("------------------------------------------------- END")
-                    return  # TODO dev break
-        return res_dict
+                    self.stats["parsed_count"] += 1
+                    yield (xml_file, sentence_entry)

src/pkg/corpusparser/corpusparser/README.md

@@ -0,0 +1,38 @@
+# corpusparser
+A tool for parsing ssj500k and Kres into a unified .json format. 
+
+## Input:
+### ssj500k
+To parse ssj500k, point to the monolythic `ssj500k-sl.body.xml` file (tested on ssj500k 2.1).  
+
+### Kres
+To parse Kres, point to folders:
+* Kres folder, containig several (around 20K) .xml files (`F00XXXXX.xml.parsed.xml`).  
+* Kres SRL folder, containing SRL links for the corresponding F00...xml files (`F00XXXXX.srl.json`).  
+
+## Internal data format
+This is the internal python dict data format. It can be stored to file as `.json` or stored into a database for application usage.  
+```python
+{
+	'sid': 'F0034713.5.0',
+	'text': 'Mednarodni denarni sklad je odobril 30 milijard evrov vredno posojilo Grčiji. ',
+	'tokens': [
+		{'text': 'Mednarodni', 'lemma': 'mednaroden', 'msd': 'Ppnmeid', 'word': True, 'tid': 1},
+		{'text': 'denarni', 'lemma': 'denaren', 'msd': 'Ppnmeid', 'word': True, 'tid': 2},
+		{'text': 'sklad', 'lemma': 'sklad', 'msd': 'Somei', 'word': True, 'tid': 3},
+		{'text': 'je', 'lemma': 'biti', 'msd': 'Gp-ste-n', 'word': True, 'tid': 4},
+		{'text': 'odobril', 'lemma': 'odobriti', 'msd': 'Ggdd-em', 'word': True, 'tid': 5},
+		{'text': '30', 'lemma': '30', 'msd': 'Kag', 'word': True, 'tid': 6},
+		{'text': 'milijard', 'lemma': 'milijarda', 'msd': 'Sozmr', 'word': True, 'tid': 7}, # ... 
+	]
+	'jos_links': [
+		{'to': 1, 'from': 3, 'afun': 'dol'},
+		{'to': 2, 'from': 3, 'afun': 'dol'},
+		{'to': 3, 'from': 5, 'afun': 'ena'}, # ...
+	]
+	'srl_links': [
+		{'to': 3, 'from': 5, 'afun': 'ACT'},
+		{'to': 7, 'from': 5, 'afun': 'PAT'}
+	]
+}
+```

src/pkg/corpusparser/corpusparser/Sentence.py

@@ -1,3 +0,0 @@
-class Sentence():
-	def __init__():
-		print("Sentence __init__(): TODO")

src/pkg/corpusparser/corpusparser/__init__.py

@@ -1,2 +1 @@
-from corpusparser.Parser import Parser
-from corpusparser.Sentence import Sentence
+from corpusparser.Parser import Parser

src/pkg/corpusparser/corpusparser/main.py

@@ -0,0 +1,102 @@
+from pathlib import Path
+from corpusparser import Parser 
+import argparse
+import logging
+import json
+
+logging.basicConfig(level=logging.INFO)
+logger = logging.getLogger(__name__)
+
+## Main handles command line arguments and writing to files / DB.  
+
+def ssj_to_json_file(sentence_generator, outfolder):
+    # this funciton is based on the fact that files are parsed sequentially
+    outfolder = Path(outfolder)
+    outfolder.mkdir(parents=True, exist_ok=True)
+    outfile = outfolder / "ssj500k.json"
+
+    data_buffer = []
+    for s in sentence_generator:
+        sdata = s[1]
+        data_buffer += [sdata]
+
+    # outfile = Path(outfile)
+    with outfile.open("w") as fp:
+        logger.info("Writing to {}".format(outfile))
+        json.dump(data_buffer, fp)
+
+def kres_to_json_files(sentence_generator, outfolder):
+    outfolder = Path(outfolder) / "kres_json"
+    outfolder.mkdir(parents=True, exist_ok=True)
+
+    def write_buffer_to_file(outfile, outfile_buffer):
+        logger.info("Writing file: {}".format(outfile))
+        with outfile.open("w") as fp:
+            json.dump(outfile_buffer, fp)
+
+    outfile_buffer = None
+    current_outfile = None
+    for s in sentence_generator:
+        infile = s[0]
+        outfile = outfolder / Path(infile.name.split(".")[0]).with_suffix(".json")
+
+        # parser sequentially parses files; when we're done with a file, write it out
+        if current_outfile is None:
+            current_outfile = outfile
+            outfile_buffer = [] 
+        elif outfile != current_outfile:
+            write_buffer_to_file(current_outfile, outfile_buffer)
+            current_outfile = outfile
+            outfile_buffer = []
+
+        # update buffer
+        sdata = s[1]
+        outfile_buffer += [sdata]
+    write_buffer_to_file(current_outfile, outfile_buffer)
+
+
+
+def to_db():
+    return "TODO"
+
+if __name__ == "__main__":
+    parser = argparse.ArgumentParser(description="Parsing corpora kres and ssj500k.")
+    parser.add_argument('--kres-folder', required=True)
+    parser.add_argument('--kres-srl-folder', required=True)
+    parser.add_argument('--ssj-file', required=True)
+    parser.add_argument('--output', required=False, default=None)
+    parser.add_argument('--outdir', required=False, default=None)
+    parser.add_argument('--dbaddr', required=False, default=None)
+    args = parser.parse_args()
+
+    # parse ssj
+    logger.info("Parsing ssj500k: {}".format(args.ssj_file))
+    ssj_parser = Parser(
+        corpus="ssj",
+        infiles=[args.ssj_file],
+    )
+    # res = [x[1]["sid"] for x in ssj_parser.sentence_generator()]
+    # logger.info("Parsed {} sentences (ssj500k)".format(len(res)))
+
+    # ssj to json
+    ssj_to_json_file(ssj_parser.sentence_generator(), args.outdir)
+
+    # parse kres
+    logger.info("Parsing Kres: {}".format(args.ssj_file))
+    kres_parser = Parser(
+        corpus="kres",
+        infiles=[args.kres_folder, args.kres_srl_folder],
+    )
+    # res = [x[1]["sid"] for x in kres_parser.sentence_generator()]
+    # logger.info("Parsed {} sentences (kres)".format(len(res)))
+
+    # kres to json
+    kres_to_json_files(kres_parser.sentence_generator(), args.outdir)
+
+
+## Handling output is situational --- implement it outside of Parser.
+## Parser returns tuples (orig_file, element)
+# 1. parse per-file and output to file (JSON)
+# 2. parse and save to DB
+
+# TODO

src/preflight/main_parse.py

@@ -1,25 +0,0 @@
-from corpusparser import Parser 
-import argparse
-
-if __name__ == "__main__":
-	parser = argparse.ArgumentParser(description="Parsing corpora kres and ssj500k.")
-	parser.add_argument('--kres-folder', required=True)
-	parser.add_argument('--kres-srl-folder', required=True)
-	parser.add_argument('--ssj-file', required=True)
-	args = parser.parse_args()	
-
-	# parse ssj
-	"""
-	ssj_parser = Parser(
-		corpus="ssj",
-		infiles=[args.ssj_file]
-	)
-	ssj_parser.parse()
-	"""
-
-	# parse kres
-	kres_parser = Parser(
-		corpus="kres",
-		infiles=[args.kres_folder, args.kres_srl_folder]
-	)
-	kres_parser.parse()