list/src/main/java/gui/WordFormationTab.java

package gui;

import static alg.XML_processing.*;
import static gui.GUIController.*;
import static gui.Messages.*;

import java.io.File;
import java.io.UnsupportedEncodingException;
import java.util.ArrayList;
import java.util.Collection;
import java.util.HashMap;
import java.util.HashSet;

import javafx.application.HostServices;
import javafx.scene.control.*;
import org.apache.commons.lang3.StringUtils;
import org.apache.logging.log4j.LogManager;
import org.apache.logging.log4j.Logger;
import org.controlsfx.control.CheckComboBox;

import data.*;
import javafx.collections.ListChangeListener;
import javafx.collections.ObservableList;
import javafx.concurrent.Task;
import javafx.fxml.FXML;
import javafx.scene.layout.AnchorPane;

@SuppressWarnings("Duplicates")
public class WordFormationTab {
	public final static Logger logger = LogManager.getLogger(WordFormationTab.class);

	public AnchorPane wordAnalysisTabPane;

	@FXML
	public Label selectedFiltersLabel;
	@FXML
	public Label solarFilters;

	@FXML
	private CheckComboBox<String> taxonomyCCB;
	private ArrayList<Taxonomy> taxonomy;

	@FXML
	private TextField minimalOccurrencesTF;
	private Integer minimalOccurrences;

	@FXML
	private TextField minimalTaxonomyTF;
	private Integer minimalTaxonomy;

	@FXML
	private Button computeB;

	@FXML
	public ProgressBar ngramProgressBar;
	@FXML
	public Label progressLabel;

	@FXML
	private Hyperlink helpH;

	private Corpus corpus;
	private HashMap<String, HashSet<String>> solarFiltersMap;
	private HostServices hostService;

	// after header scan
	private ObservableList<String> taxonomyCCBValues;
	private CorpusType currentCorpusType;
	private boolean useDb;


	public void init() {
		// taxonomy
		if (Tax.getCorpusTypesWithTaxonomy().contains(corpus.getCorpusType())) {
			taxonomyCCB.getItems().removeAll();
			taxonomyCCB.getItems().setAll(corpus.getTaxonomy());
			taxonomyCCB.getCheckModel().getCheckedItems().addListener((ListChangeListener<String>) c -> {
				taxonomy = new ArrayList<>();
				ObservableList<String> checkedItems = taxonomyCCB.getCheckModel().getCheckedItems();
				ArrayList<Taxonomy> checkedItemsTaxonomy = Taxonomy.convertStringListToTaxonomyList(checkedItems);
				taxonomy.addAll(checkedItemsTaxonomy);
				logger.info(String.format("Selected taxonomy: %s", StringUtils.join(checkedItems, ",")));
			});
			taxonomyCCB.getCheckModel().clearChecks();
		} else {
			taxonomyCCB.setDisable(true);
		}

		// set default values
		minimalOccurrencesTF.setText("1");
		minimalOccurrences = 1;

		minimalTaxonomyTF.setText("1");
		minimalTaxonomy = 1;

		minimalOccurrencesTF.focusedProperty().addListener((observable, oldValue, newValue) -> {
			if (!newValue) {
				// focus lost
				String value = minimalOccurrencesTF.getText();
				if (!ValidationUtil.isEmpty(value)) {
					if (!ValidationUtil.isNumber(value)) {
						logAlert("minimalOccurrencesTF: " + WARNING_ONLY_NUMBERS_ALLOWED);
						GUIController.showAlert(Alert.AlertType.ERROR, WARNING_ONLY_NUMBERS_ALLOWED);
					} else {
						minimalOccurrences = Integer.parseInt(value);
					}
				} else {
					minimalOccurrencesTF.setText("1");
					minimalOccurrences = 1;
				}
			}
		});

		minimalTaxonomyTF.focusedProperty().addListener((observable, oldValue, newValue) -> {
			if (!newValue) {
				// focus lost
				String value = minimalTaxonomyTF.getText();
				if (!ValidationUtil.isEmpty(value)) {
					if (!ValidationUtil.isNumber(value)) {
						logAlert("minimalTaxonomyTF: " + WARNING_ONLY_NUMBERS_ALLOWED);
						GUIController.showAlert(Alert.AlertType.ERROR, WARNING_ONLY_NUMBERS_ALLOWED);
					} else {
						minimalTaxonomy = Integer.parseInt(value);
					}
				} else {
					minimalTaxonomyTF.setText("1");
					minimalTaxonomy = 1;
				}
			}
		});

		computeB.setOnAction(e -> {
			compute();
			logger.info("compute button");
		});

        helpH.setOnAction(e -> openHelpWebsite());
	}

	private void compute() {
		Filter filter = new Filter();
		filter.setNgramValue(1);
		filter.setCalculateFor(CalculateFor.MORPHOSYNTACTIC_PROPERTY);
		filter.setTaxonomy(taxonomy);
		filter.setAl(AnalysisLevel.STRING_LEVEL);
		filter.setSkipValue(0);
		filter.setMsd(new ArrayList<>());
		filter.setIsCvv(false);
		filter.setSolarFilters(solarFiltersMap);
		filter.setMinimalOccurrences(minimalOccurrences);
		filter.setMinimalTaxonomy(minimalTaxonomy);

		String message = Validation.validateForStringLevel(filter);
		if (message == null) {
			// no errors
			logger.info("Executing: ", filter.toString());
			StatisticsNew statistic = new StatisticsNew(corpus, filter, useDb);
			execute(statistic);
		} else {
			logAlert(message);
			showAlert(Alert.AlertType.ERROR, "Prosim izpolnite polja:", message);
		}
	}

	private void openHelpWebsite(){
		hostService.showDocument(Messages.HELP_URL);
	}

	private void execute(StatisticsNew statistic) {
		logger.info("Started execution: ", statistic.getFilter());

		Collection<File> corpusFiles = statistic.getCorpus().getDetectedCorpusFiles();

		final Task<Void> task = new Task<Void>() {
			@SuppressWarnings("Duplicates")
			@Override
			protected Void call() throws Exception {
				long i = 0;
				for (File f : corpusFiles) {
					readXML(f.toString(), statistic);
					i++;
					this.updateProgress(i, corpusFiles.size());
					this.updateMessage(String.format(ONGOING_NOTIFICATION_ANALYZING_FILE_X_OF_Y, i, corpusFiles.size(), f.getName()));
				}

				return null;
			}
		};

		ngramProgressBar.progressProperty().bind(task.progressProperty());
		progressLabel.textProperty().bind(task.messageProperty());

		task.setOnSucceeded(e -> {
			try {
				// first, we have to recalculate all occurrences to detailed statistics
				boolean successullySaved = statistic.recalculateAndSaveResultToDisk();

				if (successullySaved) {
					showAlert(Alert.AlertType.INFORMATION, Messages.NOTIFICATION_ANALYSIS_COMPLETED);
				} else {
					showAlert(Alert.AlertType.INFORMATION, Messages.NOTIFICATION_ANALYSIS_COMPLETED_NO_RESULTS);
				}
			} catch (UnsupportedEncodingException e1) {
				showAlert(Alert.AlertType.ERROR, ERROR_WHILE_SAVING_RESULTS_TO_CSV);
				logger.error("Error while saving", e1);
			}

			ngramProgressBar.progressProperty().unbind();
			ngramProgressBar.setStyle(Settings.FX_ACCENT_OK);
			progressLabel.textProperty().unbind();
			progressLabel.setText("");
		});

		task.setOnFailed(e -> {
			showAlert(Alert.AlertType.ERROR, ERROR_WHILE_EXECUTING);
			logger.error("Error while executing", e);
			ngramProgressBar.progressProperty().unbind();
			ngramProgressBar.setProgress(0.0);
			ngramProgressBar.setStyle(Settings.FX_ACCENT_NOK);
			progressLabel.textProperty().unbind();
			progressLabel.setText("");
		});

		final Thread thread = new Thread(task, "task");
		thread.setDaemon(true);
		thread.start();
	}

	private void logAlert(String alert) {
		logger.info("alert: " + alert);
	}


	public void setCorpus(Corpus corpus) {
		this.corpus = corpus;

		if (corpus.getCorpusType() != CorpusType.SOLAR) {
			setSelectedFiltersLabel(null);
		} else {
			setSelectedFiltersLabel("/");
		}
	}

	public void setSelectedFiltersLabel(String content) {
		if (content != null) {
			solarFilters.setVisible(true);
			selectedFiltersLabel.setVisible(true);
			selectedFiltersLabel.setText(content);
		} else {
			solarFilters.setVisible(false);
			selectedFiltersLabel.setVisible(false);
		}
	}

	public void setSolarFiltersMap(HashMap<String, HashSet<String>> solarFiltersMap) {
		this.solarFiltersMap = solarFiltersMap;
	}

	public void setHostServices(HostServices hostServices){
		this.hostService = hostServices;
	}
}