forked from kristjan/cjvt-valency
tested db, fill, backend
This commit is contained in:
parent
7645c8724d
commit
8c6d6ab8ab
1
.gitignore
vendored
1
.gitignore
vendored
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@ -3,3 +3,4 @@ data/samples/
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*.pyc
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*.pyc
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src/frontend_vue/node_modules/
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src/frontend_vue/node_modules/
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src/frontend_vue/dist/
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src/frontend_vue/dist/
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dockerfiles/database/create.js
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16
Makefile
16
Makefile
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@ -15,13 +15,13 @@ OUTPUT = "db"
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OUTDIR = "/home/voje/workdir/test_out"
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OUTDIR = "/home/voje/workdir/test_out"
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DBADDR = "0.0.0.0:27017" # don't use localhost
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DBADDR = "0.0.0.0:27017" # don't use localhost
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DB_ADM_USER = testadmin
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DB_ADM_USER = valadmin
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DB_ADM_PASS = testadminpass
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DB_ADM_PASS = valadminpass
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DB_USR_USER = testuser
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DB_USR_USER = valuser
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DB_USR_PASS = testuserpass
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DB_USR_PASS = valuserpass
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export
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export
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.PHONY: python-env fill_database
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.PHONY: python-env fill-database
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all:
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all:
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echo "Select an argument"
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echo "Select an argument"
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@ -54,7 +54,7 @@ data/samples:
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cd data; tar xzvf samples.tar.gz
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cd data; tar xzvf samples.tar.gz
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# from inside python-env container:
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# from inside python-env container:
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fill_database: data/samples
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fill-database: data/samples
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python3 src/pkg/cjvt-corpusparser/corpusparser/main.py --kres-folder $(KRES_FOLDER) \
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python3 src/pkg/cjvt-corpusparser/corpusparser/main.py --kres-folder $(KRES_FOLDER) \
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--ssj-file $(SSJ_FILE) --kres-srl-folder $(KRES_SRL_FOLDER) \
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--ssj-file $(SSJ_FILE) --kres-srl-folder $(KRES_SRL_FOLDER) \
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--output $(OUTPUT) --outdir $(OUTDIR) --dbaddr $(DBADDR) \
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--output $(OUTPUT) --outdir $(OUTDIR) --dbaddr $(DBADDR) \
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@ -76,4 +76,6 @@ backend-env: python-env-install
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backend-dev: python-env-install
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backend-dev: python-env-install
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cd ./src/backend_flask; python3 app.py --config-file ./conf_files/dev_conf.yaml
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cd ./src/backend_flask; python3 app.py \
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--config-file ./conf_files/dev_conf.yaml \
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--dbuser $(DB_USR_USER) --dbpass $(DB_USR_PASS) --dbaddr $(DBADDR)
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@ -5,12 +5,14 @@ Required submodules:
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```bash
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```bash
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$ git submodule init
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$ git submodule init
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$ git submodule update
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```
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```
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## Components
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## Components
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### Database (2 containers)
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### Database (2 containers)
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Set db admin, user, pass, etc in Makefile.
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Spin up the database service and create users:
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Spin up the database service and create users:
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```bash
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```bash
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# $ make database-clean # opt
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# $ make database-clean # opt
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@ -33,7 +35,7 @@ $ make python-env
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$ make python-env-install
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$ make python-env-install
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# run the code
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# run the code
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$ make fill_database
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$ make fill-database
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```
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```
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If all goes well, we should be able to inspect the database on `0.0.0.0:8087`.
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If all goes well, we should be able to inspect the database on `0.0.0.0:8087`.
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@ -1,3 +0,0 @@
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db.auth("testadmin", "testadminpass")
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use valdb
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db.createUser({user: "testuser", pwd: "testuserpass", roles: ["readWrite"]})
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@ -1,16 +0,0 @@
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#!/bin/bash
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echo "exiting - check script"
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exit
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# obviously, change root and password!
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# db names: nameDB
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# collection names: lower case, plural
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# user names?
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# mongo admin -u root -p password --eval "db.getSiblingDB('vlDB').addUser('vluser', 'password')"
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docker exec -it mongo-container /bin/bash
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mongo -u root -p example
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use valDB
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db.createUser({user: "kristjan", pwd: "password", roles: ["readWrite"]})
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@ -1,316 +0,0 @@
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>
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> exit()
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2019-02-01T15:44:26.624+0000 E QUERY [js] ReferenceError: exit is not defined :
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@(shell):1:1
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>
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>
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> exit
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bye
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# exit
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┌─[✗]─[kristjan@k-arch]─[/home/kristjan/Desktop/workdir]
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└──╼ $
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┌─[✗]─[kristjan@k-arch]─[/home/kristjan/Desktop/workdir]
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└──╼ $
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┌─[✗]─[kristjan@k-arch]─[/home/kristjan/Desktop/workdir]
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└──╼ $clear
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┌─[kristjan@k-arch]─[/home/kristjan/Desktop/workdir]
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└──╼ $
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┌─[kristjan@k-arch]─[/home/kristjan/Desktop/workdir]
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└──╼ $docker exec -it mng3_mongo.1.tz20az7xgqjhu4nxzokcifeyz /bin/sh
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# mongo
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MongoDB shell version v4.0.5
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connecting to: mongodb://127.0.0.1:27017/?gssapiServiceName=mongodb
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Implicit session: session { "id" : UUID("37ea3984-719e-4381-b5da-806ef3fac970") }
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MongoDB server version: 4.0.5
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> exit
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bye
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#
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# mongo -admin root -password example
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Error parsing command line: unrecognised option '-admin'
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try 'mongo --help' for more information
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#
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# mongo -h
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MongoDB shell version v4.0.5
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usage: mongo [options] [db address] [file names (ending in .js)]
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db address can be:
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foo foo database on local machine
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192.168.0.5/foo foo database on 192.168.0.5 machine
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192.168.0.5:9999/foo foo database on 192.168.0.5 machine on port 9999
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Options:
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--shell run the shell after executing files
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--nodb don't connect to mongod on startup - no
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'db address' arg expected
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--norc will not run the ".mongorc.js" file on
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start up
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--quiet be less chatty
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--port arg port to connect to
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--host arg server to connect to
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--eval arg evaluate javascript
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-h [ --help ] show this usage information
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--version show version information
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--verbose increase verbosity
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--ipv6 enable IPv6 support (disabled by default)
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--disableJavaScriptJIT disable the Javascript Just In Time
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compiler
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--enableJavaScriptJIT enable the Javascript Just In Time
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compiler
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--disableJavaScriptProtection allow automatic JavaScript function
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marshalling
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--ssl use SSL for all connections
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--sslCAFile arg Certificate Authority file for SSL
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--sslPEMKeyFile arg PEM certificate/key file for SSL
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--sslPEMKeyPassword arg password for key in PEM file for SSL
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--sslCRLFile arg Certificate Revocation List file for SSL
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--sslAllowInvalidHostnames allow connections to servers with
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non-matching hostnames
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--sslAllowInvalidCertificates allow connections to servers with invalid
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certificates
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--sslFIPSMode activate FIPS 140-2 mode at startup
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--sslDisabledProtocols arg Comma separated list of TLS protocols to
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disable [TLS1_0,TLS1_1,TLS1_2]
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--retryWrites automatically retry write operations upon
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transient network errors
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--disableImplicitSessions do not automatically create and use
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implicit sessions
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--jsHeapLimitMB arg set the js scope's heap size limit
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Authentication Options:
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-u [ --username ] arg username for authentication
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-p [ --password ] arg password for authentication
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--authenticationDatabase arg user source (defaults to dbname)
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--authenticationMechanism arg authentication mechanism
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--gssapiServiceName arg (=mongodb) Service name to use when authenticating
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using GSSAPI/Kerberos
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--gssapiHostName arg Remote host name to use for purpose of
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GSSAPI/Kerberos authentication
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file names: a list of files to run. files have to end in .js and will exit after unless --shell is specified
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#^[[A^[[A^C
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# mongo -u root -p example
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MongoDB shell version v4.0.5
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connecting to: mongodb://127.0.0.1:27017/?gssapiServiceName=mongodb
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Implicit session: session { "id" : UUID("84cc9dc9-4682-40ea-b3bb-f8a4ce58e415") }
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MongoDB server version: 4.0.5
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Server has startup warnings:
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2019-02-01T15:32:02.149+0000 I STORAGE [initandlisten]
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2019-02-01T15:32:02.149+0000 I STORAGE [initandlisten] ** WARNING: Using the XFS filesystem is strongly recommended with the WiredTiger storage engine
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2019-02-01T15:32:02.149+0000 I STORAGE [initandlisten] ** See http://dochub.mongodb.org/core/prodnotes-filesystem
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---
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Enable MongoDB's free cloud-based monitoring service, which will then receive and display
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metrics about your deployment (disk utilization, CPU, operation statistics, etc).
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The monitoring data will be available on a MongoDB website with a unique URL accessible to you
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and anyone you share the URL with. MongoDB may use this information to make product
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improvements and to suggest MongoDB products and deployment options to you.
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To enable free monitoring, run the following command: db.enableFreeMonitoring()
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To permanently disable this reminder, run the following command: db.disableFreeMonitoring()
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---
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>
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> GOT IT
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2019-02-01T15:45:32.432+0000 E QUERY [js] SyntaxError: missing ; before statement @(shell):1:4
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>
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>
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> use valDB
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switched to db valDB
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> db.addUser("valuser", "password")
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2019-02-01T15:46:47.221+0000 E QUERY [js] TypeError: db.addUser is not a function :
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@(shell):1:1
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> db.createUser({user: "kristjan", pwd: "password"})
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2019-02-01T15:49:31.025+0000 E QUERY [js] Error: couldn't add user: "createUser" command requires a "roles" array :
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_getErrorWithCode@src/mongo/shell/utils.js:25:13
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DB.prototype.createUser@src/mongo/shell/db.js:1491:15
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@(shell):1:1
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>db.createUser({user: kristjan, pwd: password, roles: [readWrite]})
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2019-02-01T15:51:51.052+0000 E QUERY [js] ReferenceError: kristjan is not defined :
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@(shell):1:16
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> db.createUser({user: kristjan, pwd: password, roles: [readWrite]})
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2019-02-01T15:51:58.492+0000 E QUERY [js] ReferenceError: kristjan is not defined :
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@(shell):1:16
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> db.createUser({user: kristjan, pwd: password, roles: [readWrite]})
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2019-02-01T15:52:08.259+0000 E QUERY [js] ReferenceError: kristjan is not defined :
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@(shell):1:16
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> db.createUser({user: kristjan, pwd: password, roles: [readWrite]})
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2019-02-01T15:52:09.212+0000 E QUERY [js] ReferenceError: kristjan is not defined :
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@(shell):1:16
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> $ db.createUser({user: kristjan, pwd: password, roles: [readWrite]})
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2019-02-01T15:52:11.599+0000 E QUERY [js] SyntaxError: missing ; before statement @(shell):1:2
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> db.createUser({user: kristjan, pwd: password, roles: [readWrite]})
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2019-02-01T15:52:23.784+0000 E QUERY [js] ReferenceError: kristjan is not defined :
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@(shell):1:16
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> db.createUser({user: "kristjan", pwd: "password", rolse: ["readWrite"]})
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2019-02-01T15:52:53.218+0000 E QUERY [js] Error: couldn't add user: "rolse" is not a valid argument to createUser :
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_getErrorWithCode@src/mongo/shell/utils.js:25:13
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DB.prototype.createUser@src/mongo/shell/db.js:1491:15
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@(shell):1:1
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> db.createUser({user: "kristjan", pwd: "password", rolse: ["readWrite"]})
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2019-02-01T15:53:27.144+0000 E QUERY [js] Error: couldn't add user: "rolse" is not a valid argument to createUser :
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_getErrorWithCode@src/mongo/shell/utils.js:25:13
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DB.prototype.createUser@src/mongo/shell/db.js:1491:15
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@(shell):1:1
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>
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>
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> db.createUser({user: "kristjan", pwd: "password", roles: ["readWrite"]})
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Successfully added user: { "user" : "kristjan", "roles" : [ "readWrite" ] }
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>
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>
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> show dbs
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admin 0.000GB
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config 0.000GB
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local 0.000GB
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> use testDB
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switched to db testDB
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> db.createUser({user: "kristjan", pwd: "password", rolse: ["readWrite"]})
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2019-02-01T15:55:35.453+0000 E QUERY [js] Error: couldn't add user: "rolse" is not a valid argument to createUser :
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_getErrorWithCode@src/mongo/shell/utils.js:25:13
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DB.prototype.createUser@src/mongo/shell/db.js:1491:15
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@(shell):1:1
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> db.createUser({user: kristjan, pwd: password, roles: [readWrite]})
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2019-02-01T15:55:52.582+0000 E QUERY [js] ReferenceError: kristjan is not defined :
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@(shell):1:16
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>
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> db.createUser({user: "kristjan", pwd: "password", roles: ["readWrite"]})
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Successfully added user: { "user" : "kristjan", "roles" : [ "readWrite" ] }
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>
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>
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> show dbs
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admin 0.000GB
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config 0.000GB
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local 0.000GB
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>
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>
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>
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>
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>
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> db.testdata.insert({txt: "test"})
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WriteResult({ "nInserted" : 1 })
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>
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>
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> use test2
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switched to db test2
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> db.createUser({user: "test", pwd: "test", roles: ["readWrite"]})
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Successfully added user: { "user" : "test", "roles" : [ "readWrite" ] }
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> db.txts.insert({txt: "written by test user"})WriteResult({ "nInserted" : 1 })
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>
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>
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> exit
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bye
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#
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#
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# clera
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/bin/sh: 9: clera: not found
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# ls
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bin dev home lib64 opt run sys var
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boot docker-entrypoint-initdb.d js-yaml.js media proc sbin tmp
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data etc lib mnt root srv usr
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#
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#
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# clera
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/bin/sh: 13: clera: not found
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# ls
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bin dev home lib64 opt run sys var
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boot docker-entrypoint-initdb.d js-yaml.js media proc sbin tmp
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data etc lib mnt root srv usr
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#
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#
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# clear
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#
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# mongo
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MongoDB shell version v4.0.5
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connecting to: mongodb://127.0.0.1:27017/?gssapiServiceName=mongodb
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Implicit session: session { "id" : UUID("409e49e5-61d2-454e-8e22-e721379386c9") }
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MongoDB server version: 4.0.5
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>
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>
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> show dbs
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2019-02-01T15:58:28.512+0000 E QUERY [js] Error: listDatabases failed:{
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"ok" : 0,
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"errmsg" : "command listDatabases requires authentication",
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"code" : 13,
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"codeName" : "Unauthorized"
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} :
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_getErrorWithCode@src/mongo/shell/utils.js:25:13
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Mongo.prototype.getDBs@src/mongo/shell/mongo.js:124:1
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|
||||||
shellHelper.show@src/mongo/shell/utils.js:876:19
|
|
||||||
shellHelper@src/mongo/shell/utils.js:766:15
|
|
||||||
@(shellhelp2):1:1
|
|
||||||
>use texts
|
|
||||||
switched to db texts
|
|
||||||
> use derps
|
|
||||||
switched to db derps
|
|
||||||
>
|
|
||||||
>
|
|
||||||
> use testDB
|
|
||||||
switched to db testDB
|
|
||||||
> show collections
|
|
||||||
Warning: unable to run listCollections, attempting to approximate collection names by parsing connectionStatus
|
|
||||||
> db.show
|
|
||||||
testDB.show
|
|
||||||
>
|
|
||||||
> db.list
|
|
||||||
testDB.list
|
|
||||||
> testDB.list.findAll()
|
|
||||||
2019-02-01T16:00:33.108+0000 E QUERY [js] ReferenceError: testDB is not defined :
|
|
||||||
@(shell):1:1
|
|
||||||
>
|
|
||||||
>
|
|
||||||
> db.list.findAll()
|
|
||||||
2019-02-01T16:00:40.688+0000 E QUERY [js] TypeError: db.list.findAll is not a function :
|
|
||||||
@(shell):1:1
|
|
||||||
>
|
|
||||||
>
|
|
||||||
> db.list.findOne()
|
|
||||||
2019-02-01T16:00:48.507+0000 E QUERY [js] Error: error: {
|
|
||||||
"ok" : 0,
|
|
||||||
"errmsg" : "command find requires authentication",
|
|
||||||
"code" : 13,
|
|
||||||
"codeName" : "Unauthorized"
|
|
||||||
} :
|
|
||||||
_getErrorWithCode@src/mongo/shell/utils.js:25:13
|
|
||||||
DBCommandCursor@src/mongo/shell/query.js:708:1
|
|
||||||
DBQuery.prototype._exec@src/mongo/shell/query.js:113:28
|
|
||||||
DBQuery.prototype.hasNext@src/mongo/shell/query.js:288:5
|
|
||||||
DBCollection.prototype.findOne@src/mongo/shell/collection.js:260:10
|
|
||||||
@(shell):1:1
|
|
||||||
>db.auth("kristjan", "password")
|
|
||||||
1
|
|
||||||
>
|
|
||||||
> db.list.findAll()
|
|
||||||
2019-02-01T16:01:04.681+0000 E QUERY [js] TypeError: db.list.findAll is not a function :
|
|
||||||
@(shell):1:1
|
|
||||||
> db.testdata.findAll()
|
|
||||||
2019-02-01T16:01:11.772+0000 E QUERY [js] TypeError: db.testdata.findAll is not a function :
|
|
||||||
@(shell):1:1
|
|
||||||
>
|
|
||||||
>
|
|
||||||
> db.testdata.find_all()
|
|
||||||
2019-02-01T16:01:19.018+0000 E QUERY [js] TypeError: db.testdata.find_all is not a function :
|
|
||||||
@(shell):1:1
|
|
||||||
>
|
|
||||||
>
|
|
||||||
> db.testdata.findOne
|
|
||||||
function (query, fields, options, readConcern, collation) {
|
|
||||||
var cursor = this.find(query, fields, -1 /* limit */, 0 /* skip*/, 0 /* batchSize */, options);
|
|
||||||
|
|
||||||
if (readConcern) {
|
|
||||||
cursor = cursor.readConcern(readConcern);
|
|
||||||
}
|
|
||||||
|
|
||||||
if (collation) {
|
|
||||||
cursor = cursor.collation(collation);
|
|
||||||
}
|
|
||||||
|
|
||||||
if (!cursor.hasNext())
|
|
||||||
return null;
|
|
||||||
var ret = cursor.next();
|
|
||||||
if (cursor.hasNext())
|
|
||||||
throw Error("findOne has more than 1 result!");
|
|
||||||
if (ret.$err)
|
|
||||||
throw _getErrorWithCode(ret, "error " + tojson(ret));
|
|
||||||
return ret;
|
|
||||||
}
|
|
||||||
>db.testdata.find
|
|
||||||
|
|
@ -22,5 +22,5 @@ RUN apt-get install -y \
|
||||||
ENV PYTHONIOENCODING UTF-8
|
ENV PYTHONIOENCODING UTF-8
|
||||||
|
|
||||||
RUN pip3 install \
|
RUN pip3 install \
|
||||||
yaml \
|
pyyaml \
|
||||||
flask_cors
|
flask_cors
|
||||||
|
|
|
||||||
|
|
@ -23,6 +23,7 @@ import smtplib
|
||||||
from email.mime.text import MIMEText
|
from email.mime.text import MIMEText
|
||||||
from copy import deepcopy as DC
|
from copy import deepcopy as DC
|
||||||
from pathlib import Path
|
from pathlib import Path
|
||||||
|
from pymongo import MongoClient
|
||||||
import argparse
|
import argparse
|
||||||
|
|
||||||
log = logging.getLogger(__name__)
|
log = logging.getLogger(__name__)
|
||||||
|
|
@ -377,8 +378,12 @@ def api_senses_update():
|
||||||
|
|
||||||
|
|
||||||
if __name__ == "__main__":
|
if __name__ == "__main__":
|
||||||
|
print("Starting app.py main()")
|
||||||
aparser = argparse.ArgumentParser(description="Arguments for app.py")
|
aparser = argparse.ArgumentParser(description="Arguments for app.py")
|
||||||
aparser.add_argument("--config-file", type=str, help="check ./conf_files/")
|
aparser.add_argument("--config-file", type=str, help="check ./conf_files/")
|
||||||
|
aparser.add_argument("--dbuser", type=str)
|
||||||
|
aparser.add_argument("--dbpass", type=str)
|
||||||
|
aparser.add_argument("--dbaddr", type=str)
|
||||||
args = aparser.parse_args()
|
args = aparser.parse_args()
|
||||||
|
|
||||||
config = None
|
config = None
|
||||||
|
|
@ -392,7 +397,18 @@ if __name__ == "__main__":
|
||||||
else:
|
else:
|
||||||
logging.basicConfig(filename=logfile, level=logging.INFO)
|
logging.basicConfig(filename=logfile, level=logging.INFO)
|
||||||
|
|
||||||
|
# db login
|
||||||
|
client = MongoClient(
|
||||||
|
"mongodb://{}".format(args.dbaddr),
|
||||||
|
username=args.dbuser,
|
||||||
|
password=args.dbpass,
|
||||||
|
authSource="valdb",
|
||||||
|
authMechanism='SCRAM-SHA-256'
|
||||||
|
)
|
||||||
|
valdb = client.valdb
|
||||||
|
|
||||||
# log.info("[*] Starting app.py with config:\n%s".format(config))
|
# log.info("[*] Starting app.py with config:\n%s".format(config))
|
||||||
print("[*] Starting app.py with config:\n{}".format(config))
|
log.info("[*] Starting app.py with config:\n{}".format(config))
|
||||||
|
sys.exit()
|
||||||
|
|
||||||
app.run(host=str(config["host"]), port=int(config["port"]))
|
app.run(host=str(config["host"]), port=int(config["port"]))
|
||||||
|
|
|
||||||
Loading…
Reference in New Issue
Block a user