Adapted code to ssj500k and added its branch

tools/srl-20131216/tag_ssj500k2.3.sh

@@ -0,0 +1,30 @@
+#!/bin/bash
+
+# parsing tools.cfg values
+IN_FOLDER="../$(sed -n -e 's/^\s*ssj500k_tsv_folder\s*=\s*//p' ../tools.cfg.ssj500k2.3)"
+IN_FOLDER=$IN_FOLDER$1
+echo "input folder: $IN_FOLDER"
+OUT_FOLDER="../$(sed -n -e 's/^\s*ssj500k_srl\s*=\s*//p' ../tools.cfg.ssj500k2.3)"
+echo "output folder: $OUT_FOLDER"
+
+SUFFIX="srl.tsv"
+
+mkdir -p $OUT_FOLDER
+# rm $OUT_FOLDER/*${SUFFIX} &> /dev/null
+
+for infile in $IN_FOLDER/*; do
+	echo "Tagging: ${infile}"
+	base=$(basename $infile | cut -d'.' -f1)
+	outfile=${OUT_FOLDER}/${base}.${SUFFIX}
+
+	# mate-tools tagger
+	./scripts/parse_srl_only_mod.sh $infile $outfile
+
+	if [ $? -eq 0 ]; then
+		echo "Saved as ${outfile}"
+	else
+		echo "ERR"
+		exit 1
+	fi
+done
+