Modified README.md + Added licence
This commit is contained in:
parent
e90374b643
commit
7b641382d6
2
.gitignore
vendored
2
.gitignore
vendored
|
@ -4,5 +4,5 @@ internal_saves/
|
|||
__pycache__/
|
||||
results/
|
||||
data/
|
||||
config.ini
|
||||
config2.ini
|
||||
configs/
|
||||
|
|
202
LICENSE.txt
Normal file
202
LICENSE.txt
Normal file
|
@ -0,0 +1,202 @@
|
|||
|
||||
Apache License
|
||||
Version 2.0, January 2004
|
||||
http://www.apache.org/licenses/
|
||||
|
||||
TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
|
||||
|
||||
1. Definitions.
|
||||
|
||||
"License" shall mean the terms and conditions for use, reproduction,
|
||||
and distribution as defined by Sections 1 through 9 of this document.
|
||||
|
||||
"Licensor" shall mean the copyright owner or entity authorized by
|
||||
the copyright owner that is granting the License.
|
||||
|
||||
"Legal Entity" shall mean the union of the acting entity and all
|
||||
other entities that control, are controlled by, or are under common
|
||||
control with that entity. For the purposes of this definition,
|
||||
"control" means (i) the power, direct or indirect, to cause the
|
||||
direction or management of such entity, whether by contract or
|
||||
otherwise, or (ii) ownership of fifty percent (50%) or more of the
|
||||
outstanding shares, or (iii) beneficial ownership of such entity.
|
||||
|
||||
"You" (or "Your") shall mean an individual or Legal Entity
|
||||
exercising permissions granted by this License.
|
||||
|
||||
"Source" form shall mean the preferred form for making modifications,
|
||||
including but not limited to software source code, documentation
|
||||
source, and configuration files.
|
||||
|
||||
"Object" form shall mean any form resulting from mechanical
|
||||
transformation or translation of a Source form, including but
|
||||
not limited to compiled object code, generated documentation,
|
||||
and conversions to other media types.
|
||||
|
||||
"Work" shall mean the work of authorship, whether in Source or
|
||||
Object form, made available under the License, as indicated by a
|
||||
copyright notice that is included in or attached to the work
|
||||
(an example is provided in the Appendix below).
|
||||
|
||||
"Derivative Works" shall mean any work, whether in Source or Object
|
||||
form, that is based on (or derived from) the Work and for which the
|
||||
editorial revisions, annotations, elaborations, or other modifications
|
||||
represent, as a whole, an original work of authorship. For the purposes
|
||||
of this License, Derivative Works shall not include works that remain
|
||||
separable from, or merely link (or bind by name) to the interfaces of,
|
||||
the Work and Derivative Works thereof.
|
||||
|
||||
"Contribution" shall mean any work of authorship, including
|
||||
the original version of the Work and any modifications or additions
|
||||
to that Work or Derivative Works thereof, that is intentionally
|
||||
submitted to Licensor for inclusion in the Work by the copyright owner
|
||||
or by an individual or Legal Entity authorized to submit on behalf of
|
||||
the copyright owner. For the purposes of this definition, "submitted"
|
||||
means any form of electronic, verbal, or written communication sent
|
||||
to the Licensor or its representatives, including but not limited to
|
||||
communication on electronic mailing lists, source code control systems,
|
||||
and issue tracking systems that are managed by, or on behalf of, the
|
||||
Licensor for the purpose of discussing and improving the Work, but
|
||||
excluding communication that is conspicuously marked or otherwise
|
||||
designated in writing by the copyright owner as "Not a Contribution."
|
||||
|
||||
"Contributor" shall mean Licensor and any individual or Legal Entity
|
||||
on behalf of whom a Contribution has been received by Licensor and
|
||||
subsequently incorporated within the Work.
|
||||
|
||||
2. Grant of Copyright License. Subject to the terms and conditions of
|
||||
this License, each Contributor hereby grants to You a perpetual,
|
||||
worldwide, non-exclusive, no-charge, royalty-free, irrevocable
|
||||
copyright license to reproduce, prepare Derivative Works of,
|
||||
publicly display, publicly perform, sublicense, and distribute the
|
||||
Work and such Derivative Works in Source or Object form.
|
||||
|
||||
3. Grant of Patent License. Subject to the terms and conditions of
|
||||
this License, each Contributor hereby grants to You a perpetual,
|
||||
worldwide, non-exclusive, no-charge, royalty-free, irrevocable
|
||||
(except as stated in this section) patent license to make, have made,
|
||||
use, offer to sell, sell, import, and otherwise transfer the Work,
|
||||
where such license applies only to those patent claims licensable
|
||||
by such Contributor that are necessarily infringed by their
|
||||
Contribution(s) alone or by combination of their Contribution(s)
|
||||
with the Work to which such Contribution(s) was submitted. If You
|
||||
institute patent litigation against any entity (including a
|
||||
cross-claim or counterclaim in a lawsuit) alleging that the Work
|
||||
or a Contribution incorporated within the Work constitutes direct
|
||||
or contributory patent infringement, then any patent licenses
|
||||
granted to You under this License for that Work shall terminate
|
||||
as of the date such litigation is filed.
|
||||
|
||||
4. Redistribution. You may reproduce and distribute copies of the
|
||||
Work or Derivative Works thereof in any medium, with or without
|
||||
modifications, and in Source or Object form, provided that You
|
||||
meet the following conditions:
|
||||
|
||||
(a) You must give any other recipients of the Work or
|
||||
Derivative Works a copy of this License; and
|
||||
|
||||
(b) You must cause any modified files to carry prominent notices
|
||||
stating that You changed the files; and
|
||||
|
||||
(c) You must retain, in the Source form of any Derivative Works
|
||||
that You distribute, all copyright, patent, trademark, and
|
||||
attribution notices from the Source form of the Work,
|
||||
excluding those notices that do not pertain to any part of
|
||||
the Derivative Works; and
|
||||
|
||||
(d) If the Work includes a "NOTICE" text file as part of its
|
||||
distribution, then any Derivative Works that You distribute must
|
||||
include a readable copy of the attribution notices contained
|
||||
within such NOTICE file, excluding those notices that do not
|
||||
pertain to any part of the Derivative Works, in at least one
|
||||
of the following places: within a NOTICE text file distributed
|
||||
as part of the Derivative Works; within the Source form or
|
||||
documentation, if provided along with the Derivative Works; or,
|
||||
within a display generated by the Derivative Works, if and
|
||||
wherever such third-party notices normally appear. The contents
|
||||
of the NOTICE file are for informational purposes only and
|
||||
do not modify the License. You may add Your own attribution
|
||||
notices within Derivative Works that You distribute, alongside
|
||||
or as an addendum to the NOTICE text from the Work, provided
|
||||
that such additional attribution notices cannot be construed
|
||||
as modifying the License.
|
||||
|
||||
You may add Your own copyright statement to Your modifications and
|
||||
may provide additional or different license terms and conditions
|
||||
for use, reproduction, or distribution of Your modifications, or
|
||||
for any such Derivative Works as a whole, provided Your use,
|
||||
reproduction, and distribution of the Work otherwise complies with
|
||||
the conditions stated in this License.
|
||||
|
||||
5. Submission of Contributions. Unless You explicitly state otherwise,
|
||||
any Contribution intentionally submitted for inclusion in the Work
|
||||
by You to the Licensor shall be under the terms and conditions of
|
||||
this License, without any additional terms or conditions.
|
||||
Notwithstanding the above, nothing herein shall supersede or modify
|
||||
the terms of any separate license agreement you may have executed
|
||||
with Licensor regarding such Contributions.
|
||||
|
||||
6. Trademarks. This License does not grant permission to use the trade
|
||||
names, trademarks, service marks, or product names of the Licensor,
|
||||
except as required for reasonable and customary use in describing the
|
||||
origin of the Work and reproducing the content of the NOTICE file.
|
||||
|
||||
7. Disclaimer of Warranty. Unless required by applicable law or
|
||||
agreed to in writing, Licensor provides the Work (and each
|
||||
Contributor provides its Contributions) on an "AS IS" BASIS,
|
||||
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or
|
||||
implied, including, without limitation, any warranties or conditions
|
||||
of TITLE, NON-INFRINGEMENT, MERCHANTABILITY, or FITNESS FOR A
|
||||
PARTICULAR PURPOSE. You are solely responsible for determining the
|
||||
appropriateness of using or redistributing the Work and assume any
|
||||
risks associated with Your exercise of permissions under this License.
|
||||
|
||||
8. Limitation of Liability. In no event and under no legal theory,
|
||||
whether in tort (including negligence), contract, or otherwise,
|
||||
unless required by applicable law (such as deliberate and grossly
|
||||
negligent acts) or agreed to in writing, shall any Contributor be
|
||||
liable to You for damages, including any direct, indirect, special,
|
||||
incidental, or consequential damages of any character arising as a
|
||||
result of this License or out of the use or inability to use the
|
||||
Work (including but not limited to damages for loss of goodwill,
|
||||
work stoppage, computer failure or malfunction, or any and all
|
||||
other commercial damages or losses), even if such Contributor
|
||||
has been advised of the possibility of such damages.
|
||||
|
||||
9. Accepting Warranty or Additional Liability. While redistributing
|
||||
the Work or Derivative Works thereof, You may choose to offer,
|
||||
and charge a fee for, acceptance of support, warranty, indemnity,
|
||||
or other liability obligations and/or rights consistent with this
|
||||
License. However, in accepting such obligations, You may act only
|
||||
on Your own behalf and on Your sole responsibility, not on behalf
|
||||
of any other Contributor, and only if You agree to indemnify,
|
||||
defend, and hold each Contributor harmless for any liability
|
||||
incurred by, or claims asserted against, such Contributor by reason
|
||||
of your accepting any such warranty or additional liability.
|
||||
|
||||
END OF TERMS AND CONDITIONS
|
||||
|
||||
APPENDIX: How to apply the Apache License to your work.
|
||||
|
||||
To apply the Apache License to your work, attach the following
|
||||
boilerplate notice, with the fields enclosed by brackets "[]"
|
||||
replaced with your own identifying information. (Don't include
|
||||
the brackets!) The text should be enclosed in the appropriate
|
||||
comment syntax for the file format. We also recommend that a
|
||||
file or class name and description of purpose be included on the
|
||||
same "printed page" as the copyright notice for easier
|
||||
identification within third-party archives.
|
||||
|
||||
Copyright [yyyy] [name of copyright owner]
|
||||
|
||||
Licensed under the Apache License, Version 2.0 (the "License");
|
||||
you may not use this file except in compliance with the License.
|
||||
You may obtain a copy of the License at
|
||||
|
||||
http://www.apache.org/licenses/LICENSE-2.0
|
||||
|
||||
Unless required by applicable law or agreed to in writing, software
|
||||
distributed under the License is distributed on an "AS IS" BASIS,
|
||||
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||
See the License for the specific language governing permissions and
|
||||
limitations under the License.
|
37
README.md
37
README.md
|
@ -1,4 +1,6 @@
|
|||
# dependency parsetree
|
||||
# STARK: a tool for statisical analysis of dependency-parsed corpora
|
||||
STARK is a python-based command-line tool for extraction of dependency trees from parsed corpora based on various user-defined criteria. It is primarily aimed at processing corpora based on the [Universal Dependencies](https://universaldependencies.org/) annotation scheme, but it also takes any other corpus in the [CONLL-U](https://universaldependencies.org/format.html) format as input.
|
||||
|
||||
## Linux installation and execution
|
||||
### Installation
|
||||
Install python 3 on your sistem.
|
||||
|
@ -24,8 +26,37 @@ python3 dependency-parsetree.py --config_file=<PATH TO .ini file>
|
|||
|
||||
Example:
|
||||
```bash
|
||||
python3 dependency-parsetree.py --config_file=official_config.ini
|
||||
python3 dependency-parsetree.py --config_file=config.ini
|
||||
```
|
||||
|
||||
## Parameter settings
|
||||
The type of trees to be extracted can be defined through several parameters in the `config.ini` configuration file.
|
||||
|
||||
[![alt text](https://gitea.cjvt.si/lkrsnik/dependency_parsing/raw/branch/master/Clarin-SI-logo.png)](http://www.clarin.si/info/about/)
|
||||
- `input`: location of the input file or directory (parsed corpus in .conllu)
|
||||
- `output`: location of the output file (extraction results)
|
||||
- `internal_saves`: location of the folder with files for optimization during processing
|
||||
- `cpu_cores`: number of CPU cores to be used during processing
|
||||
- `tree_size`: number of nodes in the tree (integer or range)
|
||||
- `tree_type`: extraction of all possible subtrees or full subtrees only (values *all* or *complete*)
|
||||
- `dependency_type`: extraction of labeled or unlabeled trees (values *labeled* or *unlabeled*)
|
||||
- `node_order`: extraction of trees by taking surface word order into account (values *free* or *fixed*)
|
||||
- `node_type`: type of nodes under investigation (values *form*, *lemma*, *upos*, *xpos*, *feats* or *deprel*)
|
||||
- `label_whitelist`: predefined list of dependency labels allowed in the extracted tree
|
||||
- `root_whitelist`: predefined characteristics of the root node
|
||||
- `query`: predefined tree structure based on the modified Turku NLP [query language](http://bionlp.utu.fi/searchexpressions-new.html).
|
||||
- `print_root`: print root node information in the output file (values *yes* or *no*)
|
||||
- `nodes_number`: print the number of nodes in the tree in the output file (values *yes* or *no*)
|
||||
- `association_measures`: calculate the strength of association between nodes by MI, MI3, t-test, logDice, Dice and simple-LL scores (values *yes* or *no*)
|
||||
- `frequency_threshold`: minimum frequency of occurrences of the tree in the corpus
|
||||
- `lines_threshold`: maximum number of trees in the output
|
||||
|
||||
## Output
|
||||
The tool returns the resulting list of all relevant trees in the form of a tab-separated `.tsv` file with information on the tree structure, its frequency and other relevant information in relation to specific parameter settings. The tool does not support any data visualization, however, the output structure of the tree is directly trasnferable to the [Dep_Search](http://bionlp-www.utu.fi/dep_search/) concordancing service giving access to specific examples in many corpora.
|
||||
|
||||
## Credits
|
||||
This program was developed by Luka Krsnik in collaboration with Kaja Dobrovoljc and Marko Robnik Šikonja and with financial support from [CLARIN.SI](https://www.clarin.si/).
|
||||
|
||||
[![alt text](https://gitea.cjvt.si/lkrsnik/dependency_parsing/raw/branch/master/logos/CLARIN.png)](http://www.clarin.si/info/about/)
|
||||
[![alt text](https://gitea.cjvt.si/lkrsnik/dependency_parsing/raw/branch/master/logos/CJVT.png)](https://www.cjvt.si/en/)
|
||||
[![alt text](https://gitea.cjvt.si/lkrsnik/dependency_parsing/raw/branch/master/logos/FRI.png)](https://www.fri.uni-lj.si/en/about)
|
||||
[![alt text](https://gitea.cjvt.si/lkrsnik/dependency_parsing/raw/branch/master/logos/FF.png)](http://www.ff.uni-lj.si/an/aboutFaculty/about_faculty)
|
140
Result.py
140
Result.py
|
@ -1,140 +0,0 @@
|
|||
import copy
|
||||
import string
|
||||
|
||||
from generic import create_output_string_form, create_output_string_deprel, create_output_string_lemma, \
|
||||
create_output_string_upos, create_output_string_xpos, create_output_string_feats, generate_key
|
||||
|
||||
|
||||
class Result(object):
|
||||
def __init__(self, node, architecture_order, create_output_strings):
|
||||
# self.array = [[create_output_string(node) for create_output_string in create_output_strings]]
|
||||
# if create_output_string_lemma in create_output_strings:
|
||||
# key_array = [[create_output_string(node) if create_output_string != create_output_string_lemma else 'L=' + create_output_string(node) for create_output_string in create_output_strings]]
|
||||
# else:
|
||||
# key_array = self.array
|
||||
# if len(self.array[0]) > 1:
|
||||
# self.key = '&'.join(key_array[0])
|
||||
# else:
|
||||
# # output_string = create_output_strings[0](node)
|
||||
# self.key = key_array[0][0]
|
||||
|
||||
self.array, self.key = generate_key(node, create_output_strings)
|
||||
self.key_free = self.key
|
||||
# self.array = [[output_string]]
|
||||
self.order_key = str(architecture_order)
|
||||
self.order = [architecture_order]
|
||||
self.deprel = node.deprel.get_value()
|
||||
# order with original numbers in sentences
|
||||
# self.order = str([architecture_order])
|
||||
# order with numbers from 0 to n of n-gram
|
||||
self.root = ''
|
||||
self.final_order = ''
|
||||
self.separators = []
|
||||
|
||||
def __repr__(self):
|
||||
return self.key
|
||||
|
||||
def add(self, string, architecture_order, separator, is_left):
|
||||
if is_left:
|
||||
self.array = [string] + self.array
|
||||
self.order = [architecture_order] + self.order
|
||||
# self.order = [architecture_order] + self.order
|
||||
self.separators = [separator] + self.separators
|
||||
self.key = string + ' ' + separator + ' ' + self.key
|
||||
self.order_key = architecture_order + ' ' + separator + ' ' + self.order_key
|
||||
|
||||
else:
|
||||
self.array += [string]
|
||||
self.order += [architecture_order]
|
||||
# self.order += [architecture_order]
|
||||
self.separators += [separator]
|
||||
|
||||
self.key += ' ' + separator + ' ' + string
|
||||
self.order_key += ' ' + separator + ' ' + architecture_order
|
||||
|
||||
def add_separator(self, separator, left=True):
|
||||
self_copy = copy.copy(self)
|
||||
if left:
|
||||
self_copy.separators += [separator]
|
||||
self_copy.key += separator
|
||||
self_copy.order_key += separator
|
||||
else:
|
||||
self_copy.separators = [separator] + self_copy.separators
|
||||
self_copy.key = separator + self_copy.key
|
||||
self_copy.order_key = separator + self_copy.order_key
|
||||
return self_copy
|
||||
|
||||
# def merge_results2(self):
|
||||
|
||||
|
||||
def merge_results(self, right_t, separator, left=True):
|
||||
left_tree = copy.copy(self)
|
||||
right_tree = copy.copy(right_t)
|
||||
|
||||
if separator:
|
||||
if left:
|
||||
# merged_results.append(left_part + right_part + separator)
|
||||
left_tree.key = left_tree.key + right_tree.key + separator
|
||||
left_tree.order_key = left_tree.order_key + right_tree.order_key + separator
|
||||
left_tree.array = left_tree.array + right_tree.array
|
||||
left_tree.order = left_tree.order + right_tree.order
|
||||
# left_tree.order = str([architecture_order])
|
||||
left_tree.separators = left_tree.separators + right_tree.separators + [separator]
|
||||
else:
|
||||
# merged_results.append(left_part + separator + right_part)
|
||||
left_tree.key = left_tree.key + separator + right_tree.key
|
||||
left_tree.order_key = left_tree.order_key + separator + right_tree.order_key
|
||||
left_tree.array = left_tree.array + right_tree.array
|
||||
left_tree.order = left_tree.order + right_tree.order
|
||||
# left_tree.order = str([architecture_order])
|
||||
left_tree.separators = left_tree.separators + [separator] + right_tree.separators
|
||||
else:
|
||||
# merged_results.append(left_part + right_part)
|
||||
left_tree.key = left_tree.key + right_tree.key
|
||||
left_tree.order_key = left_tree.order_key + right_tree.order_key
|
||||
left_tree.array = left_tree.array + right_tree.array
|
||||
left_tree.order = left_tree.order + right_tree.order
|
||||
# left_tree.order = str([architecture_order])
|
||||
left_tree.separators = left_tree.separators + right_tree.separators
|
||||
|
||||
return left_tree
|
||||
|
||||
def extend_answer(self, other_answer, separator):
|
||||
self.array.extend(other_answer.array)
|
||||
self.order.extend(other_answer.order)
|
||||
self.key += separator + other_answer.key
|
||||
self.order_key += separator + other_answer.order_key
|
||||
self.separators.extend(separator)
|
||||
|
||||
def put_in_bracelets(self, inplace=False):
|
||||
if inplace:
|
||||
self.key = ('(' + self.key + ')')
|
||||
self.order_key = ('(' + self.order_key + ')')
|
||||
return
|
||||
result = copy.copy(self)
|
||||
result.key = ('(' + result.key + ')')
|
||||
result.order_key = ('(' + result.order_key + ')')
|
||||
return result
|
||||
|
||||
def finalize_result(self):
|
||||
result = copy.copy(self)
|
||||
result.key = result.key[1:-1]
|
||||
result.set_root()
|
||||
|
||||
# create order letters
|
||||
order_letters = [''] * len(result.order)
|
||||
for i in range(len(result.order)):
|
||||
ind = result.order.index(min(result.order))
|
||||
result.order[ind] = 10000
|
||||
order_letters[ind] = string.ascii_uppercase[i]
|
||||
result.order = ''.join(order_letters)
|
||||
# result.order_key = result.order_key[1:-1]
|
||||
# TODO When tree is finalized create relative word order (alphabet)!
|
||||
return result
|
||||
|
||||
def set_root(self):
|
||||
if len(self.array[0]) > 1:
|
||||
self.root = '&'.join(self.array[0])
|
||||
else:
|
||||
# output_string = create_output_strings[0](node)
|
||||
self.root = self.array[0][0]
|
|
@ -1,3 +1,17 @@
|
|||
# Copyright 2019 CJVT
|
||||
#
|
||||
# Licensed under the Apache License, Version 2.0 (the "License");
|
||||
# you may not use this file except in compliance with the License.
|
||||
# You may obtain a copy of the License at
|
||||
#
|
||||
# http://www.apache.org/licenses/LICENSE-2.0
|
||||
#
|
||||
# Unless required by applicable law or agreed to in writing, software
|
||||
# distributed under the License is distributed on an "AS IS" BASIS,
|
||||
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||
# See the License for the specific language governing permissions and
|
||||
# limitations under the License.
|
||||
|
||||
from generic import generate_key, generate_name
|
||||
|
||||
|
||||
|
|
|
@ -1,3 +1,17 @@
|
|||
# Copyright 2019 CJVT
|
||||
#
|
||||
# Licensed under the Apache License, Version 2.0 (the "License");
|
||||
# you may not use this file except in compliance with the License.
|
||||
# You may obtain a copy of the License at
|
||||
#
|
||||
# http://www.apache.org/licenses/LICENSE-2.0
|
||||
#
|
||||
# Unless required by applicable law or agreed to in writing, software
|
||||
# distributed under the License is distributed on an "AS IS" BASIS,
|
||||
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||
# See the License for the specific language governing permissions and
|
||||
# limitations under the License.
|
||||
|
||||
import copy
|
||||
import string
|
||||
|
||||
|
|
3
Tree.py
3
Tree.py
|
@ -1,7 +1,6 @@
|
|||
import sys
|
||||
from copy import copy
|
||||
|
||||
from Result import Result
|
||||
from ResultNode import ResultNode
|
||||
from ResultTree import ResultTree
|
||||
from Value import Value
|
||||
|
@ -270,7 +269,7 @@ class Tree(object):
|
|||
# TODO add order rearagement (TO KEY)
|
||||
complete_answers[i].extend(new_complete_answers[i])
|
||||
|
||||
# if create_output_string_form(self) == 'Dogodek':
|
||||
# if create_output_string_lemma(self) == 'drama':
|
||||
# print('HERE!@@!')
|
||||
# if create_output_string_form(self) == 'vpiti':
|
||||
# print('HERE!@@!')
|
||||
|
|
14
Value.py
14
Value.py
|
@ -1,3 +1,17 @@
|
|||
# Copyright 2019 CJVT
|
||||
#
|
||||
# Licensed under the Apache License, Version 2.0 (the "License");
|
||||
# you may not use this file except in compliance with the License.
|
||||
# You may obtain a copy of the License at
|
||||
#
|
||||
# http://www.apache.org/licenses/LICENSE-2.0
|
||||
#
|
||||
# Unless required by applicable law or agreed to in writing, software
|
||||
# distributed under the License is distributed on an "AS IS" BASIS,
|
||||
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||
# See the License for the specific language governing permissions and
|
||||
# limitations under the License.
|
||||
|
||||
class Value(object):
|
||||
def __init__(self, value):
|
||||
self.value = value
|
||||
|
|
|
@ -1,4 +1,18 @@
|
|||
#!/usr/bin/env python
|
||||
# Copyright 2019 CJVT
|
||||
#
|
||||
# Licensed under the Apache License, Version 2.0 (the "License");
|
||||
# you may not use this file except in compliance with the License.
|
||||
# You may obtain a copy of the License at
|
||||
#
|
||||
# http://www.apache.org/licenses/LICENSE-2.0
|
||||
#
|
||||
# Unless required by applicable law or agreed to in writing, software
|
||||
# distributed under the License is distributed on an "AS IS" BASIS,
|
||||
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||
# See the License for the specific language governing permissions and
|
||||
# limitations under the License.
|
||||
|
||||
import argparse
|
||||
import configparser
|
||||
import copy
|
||||
|
@ -11,6 +25,16 @@ import string
|
|||
import time
|
||||
import timeit
|
||||
from multiprocessing import Pool
|
||||
import gzip
|
||||
|
||||
def save_zipped_pickle(obj, filename, protocol=-1):
|
||||
with gzip.open(filename, 'wb') as f:
|
||||
pickle.dump(obj, f, protocol)
|
||||
|
||||
def load_zipped_pickle(filename):
|
||||
with gzip.open(filename, 'rb') as f:
|
||||
loaded_object = pickle.load(f)
|
||||
return loaded_object
|
||||
|
||||
import pyconll
|
||||
|
||||
|
@ -123,6 +147,8 @@ def decode_query(orig_query, dependency_type, feats_detailed_list):
|
|||
def create_trees(config):
|
||||
internal_saves = config.get('settings', 'internal_saves')
|
||||
input_path = config.get('settings', 'input')
|
||||
# internal_saves = filters['internal_saves']
|
||||
# input_path = filters['input']
|
||||
hash_object = hashlib.sha1(input_path.encode('utf-8'))
|
||||
hex_dig = hash_object.hexdigest()
|
||||
trees_read_outputfile = os.path.join(internal_saves, hex_dig)
|
||||
|
@ -183,14 +209,16 @@ def create_trees(config):
|
|||
raise Exception('No root element in sentence!')
|
||||
all_trees.append(root)
|
||||
|
||||
|
||||
with open(trees_read_outputfile, 'wb') as output:
|
||||
pickle.dump((all_trees, form_dict, lemma_dict, upos_dict, xpos_dict, deprel_dict, corpus_size, feats_detailed_dict), output)
|
||||
save_zipped_pickle((all_trees, form_dict, lemma_dict, upos_dict, xpos_dict, deprel_dict, corpus_size, feats_detailed_dict), trees_read_outputfile, protocol=2)
|
||||
# with open(trees_read_outputfile, 'wb') as output:
|
||||
#
|
||||
# pickle.dump((all_trees, form_dict, lemma_dict, upos_dict, xpos_dict, deprel_dict, corpus_size, feats_detailed_dict), output)
|
||||
else:
|
||||
print('Reading trees:')
|
||||
print('Completed')
|
||||
with open(trees_read_outputfile, 'rb') as pkl_file:
|
||||
(all_trees, form_dict, lemma_dict, upos_dict, xpos_dict, deprel_dict, corpus_size, feats_detailed_dict) = pickle.load(pkl_file)
|
||||
all_trees, form_dict, lemma_dict, upos_dict, xpos_dict, deprel_dict, corpus_size, feats_detailed_dict = load_zipped_pickle(trees_read_outputfile)
|
||||
# with open(trees_read_outputfile, 'rb') as pkl_file:
|
||||
# (all_trees, form_dict, lemma_dict, upos_dict, xpos_dict, deprel_dict, corpus_size, feats_detailed_dict) = pickle.load(pkl_file)
|
||||
|
||||
return all_trees, form_dict, lemma_dict, upos_dict, xpos_dict, deprel_dict, corpus_size, feats_detailed_dict
|
||||
|
||||
|
@ -333,123 +361,8 @@ def create_ngrams_query_trees(n, trees):
|
|||
# tree['children'] = [{}]
|
||||
return trees
|
||||
|
||||
|
||||
def main():
|
||||
parser = argparse.ArgumentParser()
|
||||
|
||||
## Required parameters
|
||||
parser.add_argument("--config_file",
|
||||
default=None,
|
||||
type=str,
|
||||
required=True,
|
||||
help="The input config file.")
|
||||
args = parser.parse_args()
|
||||
|
||||
config = configparser.ConfigParser()
|
||||
config.read(args.config_file)
|
||||
# a = args.config_file
|
||||
# config.read('config.ini')
|
||||
# create queries
|
||||
tree_size = 0
|
||||
|
||||
# 261 - 9 grams
|
||||
# 647 - 10 grams
|
||||
# 1622 - 11 grams
|
||||
# 4126 - 12 grams
|
||||
# 10598 - 13 grams
|
||||
(all_trees, form_dict, lemma_dict, upos_dict, xpos_dict, deprel_dict, corpus_size,
|
||||
feats_detailed_list) = create_trees(config)
|
||||
|
||||
|
||||
|
||||
# if config.getint('settings', 'tree_size') == 2:
|
||||
# tree_size = 2
|
||||
# query_tree = [{"children": [{}]}]
|
||||
# elif config.getint('settings', 'tree_size') == 3:
|
||||
# tree_size = 3
|
||||
# query_tree = [{"children": [{}, {}]}, {"children": [{"children": [{}]}]}]
|
||||
# elif config.getint('settings', 'tree_size') == 4:
|
||||
# tree_size = 4
|
||||
# query_tree = [{"children": [{}, {}, {}]}, {"children": [{"children": [{}, {}]}]}, {"children": [{"children": [{}]}, {}]}, {"children": [{"children": [{"children": [{}]}]}]}]
|
||||
# elif config.getint('settings', 'tree_size') == 5:
|
||||
# tree_size = 5
|
||||
# query_tree = [{"children": [{}, {}, {}, {}]}, {"children": [{"children": [{}]}, {}, {}]}, {"children": [{"children": [{}, {}]}, {}]}, {"children": [{"children": [{}]}, {"children": [{}]}]},
|
||||
# {"children": [{"children": [{"children": [{}]}]}, {}]}, {"children": [{"children": [{"children": [{}]}, {}]}]}, {"children": [{"children": [{"children": [{}, {}]}]}]},
|
||||
# {"children": [{"children": [{"children": [{"children": [{}]}]}]}]}, {'children': [{'children': [{}, {}, {}]}]}]
|
||||
tree_size_range = config.get('settings', 'tree_size', fallback='0').split('-')
|
||||
tree_size_range = [int(r) for r in tree_size_range]
|
||||
|
||||
if tree_size_range[0] > 1:
|
||||
if len(tree_size_range) == 1:
|
||||
query_tree = create_ngrams_query_trees(tree_size_range[0], [{}])
|
||||
elif len(tree_size_range) == 2:
|
||||
query_tree = []
|
||||
for i in range(tree_size_range[0], tree_size_range[1] + 1):
|
||||
query_tree.extend(create_ngrams_query_trees(i, [{}]))
|
||||
else:
|
||||
query_tree = [decode_query('(' + config.get('settings', 'query') + ')', '', feats_detailed_list)]
|
||||
# order_independent_queries(query_tree)
|
||||
|
||||
|
||||
# set filters
|
||||
node_types = config.get('settings', 'node_type').split('+')
|
||||
create_output_string_functs = []
|
||||
for node_type in node_types:
|
||||
assert node_type in ['deprel', 'lemma', 'upos', 'xpos', 'form', 'feats'], '"node_type" is not set up correctly'
|
||||
cpu_cores = config.getint('settings', 'cpu_cores')
|
||||
if node_type == 'deprel':
|
||||
create_output_string_funct = create_output_string_deprel
|
||||
elif node_type == 'lemma':
|
||||
create_output_string_funct = create_output_string_lemma
|
||||
elif node_type == 'upos':
|
||||
create_output_string_funct = create_output_string_upos
|
||||
elif node_type == 'xpos':
|
||||
create_output_string_funct = create_output_string_xpos
|
||||
elif node_type == 'feats':
|
||||
create_output_string_funct = create_output_string_feats
|
||||
else:
|
||||
create_output_string_funct = create_output_string_form
|
||||
create_output_string_functs.append(create_output_string_funct)
|
||||
|
||||
result_dict = {}
|
||||
unigrams_dict = {}
|
||||
filters = {}
|
||||
filters['node_order'] = config.get('settings', 'node_order') == 'fixed'
|
||||
# filters['caching'] = config.getboolean('settings', 'caching')
|
||||
filters['dependency_type'] = config.get('settings', 'dependency_type') == 'labeled'
|
||||
if config.has_option('settings', 'label_whitelist'):
|
||||
filters['label_whitelist'] = config.get('settings', 'label_whitelist').split('|')
|
||||
else:
|
||||
filters['label_whitelist'] = []
|
||||
|
||||
if config.has_option('settings', 'root_whitelist'):
|
||||
# test
|
||||
filters['root_whitelist'] = []
|
||||
|
||||
for option in config.get('settings', 'root_whitelist'). split('|'):
|
||||
attribute_dict = {}
|
||||
for attribute in option.split('&'):
|
||||
value = attribute.split('=')
|
||||
# assert value[0] in ['deprel', 'lemma', 'upos', 'xpos', 'form',
|
||||
# 'feats'], '"root_whitelist" is not set up correctly'
|
||||
attribute_dict[value[0]] = value[1]
|
||||
filters['root_whitelist'].append(attribute_dict)
|
||||
# filters['root_whitelist'] = [{'upos': 'NOUN', 'Case': 'Nom'}, {'upos': 'ADJ', 'Degree': 'Sup'}]
|
||||
else:
|
||||
filters['root_whitelist'] = []
|
||||
|
||||
filters['complete_tree_type'] = config.get('settings', 'tree_type') == 'complete'
|
||||
filters['association_measures'] = config.getboolean('settings', 'association_measures')
|
||||
filters['nodes_number'] = config.getboolean('settings', 'nodes_number')
|
||||
filters['frequency_threshold'] = config.getfloat('settings', 'frequency_threshold', fallback=0)
|
||||
filters['lines_threshold'] = config.getint('settings', 'lines_threshold', fallback=0)
|
||||
filters['print_root'] = config.getboolean('settings', 'print_root')
|
||||
|
||||
|
||||
# for tree in all_trees[2:]:
|
||||
# for tree in all_trees[1205:]:
|
||||
def count_trees(cpu_cores, all_trees, query_tree, create_output_string_functs, filters, unigrams_dict, result_dict):
|
||||
with Pool(cpu_cores) as p:
|
||||
start_exe_time = time.time()
|
||||
# 1.25 s (16 cores)
|
||||
# chunked_trees = list(chunkify(all_trees, cpu_cores))
|
||||
# if cpu_cores > 1:
|
||||
|
@ -531,8 +444,133 @@ def main():
|
|||
else:
|
||||
result_dict[key] = {'object': r, 'number': 1}
|
||||
|
||||
print("Execution time:")
|
||||
print("--- %s seconds ---" % (time.time() - start_exe_time))
|
||||
def read_filters(config, feats_detailed_list):
|
||||
tree_size_range = config.get('settings', 'tree_size', fallback='0').split('-')
|
||||
tree_size_range = [int(r) for r in tree_size_range]
|
||||
|
||||
if tree_size_range[0] > 1:
|
||||
if len(tree_size_range) == 1:
|
||||
query_tree = create_ngrams_query_trees(tree_size_range[0], [{}])
|
||||
elif len(tree_size_range) == 2:
|
||||
query_tree = []
|
||||
for i in range(tree_size_range[0], tree_size_range[1] + 1):
|
||||
query_tree.extend(create_ngrams_query_trees(i, [{}]))
|
||||
else:
|
||||
query_tree = [decode_query('(' + config.get('settings', 'query') + ')', '', feats_detailed_list)]
|
||||
# order_independent_queries(query_tree)
|
||||
|
||||
# set filters
|
||||
node_types = config.get('settings', 'node_type').split('+')
|
||||
create_output_string_functs = []
|
||||
for node_type in node_types:
|
||||
assert node_type in ['deprel', 'lemma', 'upos', 'xpos', 'form', 'feats'], '"node_type" is not set up correctly'
|
||||
cpu_cores = config.getint('settings', 'cpu_cores')
|
||||
if node_type == 'deprel':
|
||||
create_output_string_funct = create_output_string_deprel
|
||||
elif node_type == 'lemma':
|
||||
create_output_string_funct = create_output_string_lemma
|
||||
elif node_type == 'upos':
|
||||
create_output_string_funct = create_output_string_upos
|
||||
elif node_type == 'xpos':
|
||||
create_output_string_funct = create_output_string_xpos
|
||||
elif node_type == 'feats':
|
||||
create_output_string_funct = create_output_string_feats
|
||||
else:
|
||||
create_output_string_funct = create_output_string_form
|
||||
create_output_string_functs.append(create_output_string_funct)
|
||||
|
||||
result_dict = {}
|
||||
unigrams_dict = {}
|
||||
filters = {}
|
||||
filters['internal_saves'] = config.get('settings', 'internal_saves')
|
||||
filters['input'] = config.get('settings', 'input')
|
||||
filters['node_order'] = config.get('settings', 'node_order') == 'fixed'
|
||||
# filters['caching'] = config.getboolean('settings', 'caching')
|
||||
filters['dependency_type'] = config.get('settings', 'dependency_type') == 'labeled'
|
||||
if config.has_option('settings', 'label_whitelist'):
|
||||
filters['label_whitelist'] = config.get('settings', 'label_whitelist').split('|')
|
||||
else:
|
||||
filters['label_whitelist'] = []
|
||||
|
||||
if config.has_option('settings', 'root_whitelist'):
|
||||
# test
|
||||
filters['root_whitelist'] = []
|
||||
|
||||
for option in config.get('settings', 'root_whitelist').split('|'):
|
||||
attribute_dict = {}
|
||||
for attribute in option.split('&'):
|
||||
value = attribute.split('=')
|
||||
# assert value[0] in ['deprel', 'lemma', 'upos', 'xpos', 'form',
|
||||
# 'feats'], '"root_whitelist" is not set up correctly'
|
||||
attribute_dict[value[0]] = value[1]
|
||||
filters['root_whitelist'].append(attribute_dict)
|
||||
# filters['root_whitelist'] = [{'upos': 'NOUN', 'Case': 'Nom'}, {'upos': 'ADJ', 'Degree': 'Sup'}]
|
||||
else:
|
||||
filters['root_whitelist'] = []
|
||||
|
||||
filters['complete_tree_type'] = config.get('settings', 'tree_type') == 'complete'
|
||||
filters['association_measures'] = config.getboolean('settings', 'association_measures')
|
||||
filters['nodes_number'] = config.getboolean('settings', 'nodes_number')
|
||||
filters['frequency_threshold'] = config.getfloat('settings', 'frequency_threshold', fallback=0)
|
||||
filters['lines_threshold'] = config.getint('settings', 'lines_threshold', fallback=0)
|
||||
filters['print_root'] = config.getboolean('settings', 'print_root')
|
||||
|
||||
return filters, query_tree, create_output_string_functs, cpu_cores, unigrams_dict, result_dict, tree_size_range, node_types
|
||||
|
||||
def main():
|
||||
parser = argparse.ArgumentParser()
|
||||
|
||||
## Required parameters
|
||||
parser.add_argument("--config_file",
|
||||
default=None,
|
||||
type=str,
|
||||
required=True,
|
||||
help="The input config file.")
|
||||
args = parser.parse_args()
|
||||
|
||||
config = configparser.ConfigParser()
|
||||
config.read(args.config_file)
|
||||
|
||||
|
||||
|
||||
# a = args.config_file
|
||||
# config.read('config.ini')
|
||||
# create queries
|
||||
|
||||
# 261 - 9 grams
|
||||
# 647 - 10 grams
|
||||
# 1622 - 11 grams
|
||||
# 4126 - 12 grams
|
||||
# 10598 - 13 grams
|
||||
(all_trees, form_dict, lemma_dict, upos_dict, xpos_dict, deprel_dict, corpus_size,
|
||||
feats_detailed_list) = create_trees(config)
|
||||
|
||||
filters, query_tree, create_output_string_functs, cpu_cores, unigrams_dict, result_dict, tree_size_range, node_types = read_filters(config, feats_detailed_list)
|
||||
|
||||
# if config.getint('settings', 'tree_size') == 2:
|
||||
# tree_size = 2
|
||||
# query_tree = [{"children": [{}]}]
|
||||
# elif config.getint('settings', 'tree_size') == 3:
|
||||
# tree_size = 3
|
||||
# query_tree = [{"children": [{}, {}]}, {"children": [{"children": [{}]}]}]
|
||||
# elif config.getint('settings', 'tree_size') == 4:
|
||||
# tree_size = 4
|
||||
# query_tree = [{"children": [{}, {}, {}]}, {"children": [{"children": [{}, {}]}]}, {"children": [{"children": [{}]}, {}]}, {"children": [{"children": [{"children": [{}]}]}]}]
|
||||
# elif config.getint('settings', 'tree_size') == 5:
|
||||
# tree_size = 5
|
||||
# query_tree = [{"children": [{}, {}, {}, {}]}, {"children": [{"children": [{}]}, {}, {}]}, {"children": [{"children": [{}, {}]}, {}]}, {"children": [{"children": [{}]}, {"children": [{}]}]},
|
||||
# {"children": [{"children": [{"children": [{}]}]}, {}]}, {"children": [{"children": [{"children": [{}]}, {}]}]}, {"children": [{"children": [{"children": [{}, {}]}]}]},
|
||||
# {"children": [{"children": [{"children": [{"children": [{}]}]}]}]}, {'children': [{'children': [{}, {}, {}]}]}]
|
||||
|
||||
|
||||
|
||||
# for tree in all_trees[2:]:
|
||||
# for tree in all_trees[1205:]:
|
||||
start_exe_time = time.time()
|
||||
count_trees(cpu_cores, all_trees, query_tree, create_output_string_functs, filters, unigrams_dict, result_dict)
|
||||
|
||||
print("Execution time:")
|
||||
print("--- %s seconds ---" % (time.time() - start_exe_time))
|
||||
# test 1 layer queries
|
||||
# # tree.r_children = []
|
||||
# # tree.children[1].children = []
|
||||
|
|
14
generic.py
14
generic.py
|
@ -1,3 +1,17 @@
|
|||
# Copyright 2019 CJVT
|
||||
#
|
||||
# Licensed under the Apache License, Version 2.0 (the "License");
|
||||
# you may not use this file except in compliance with the License.
|
||||
# You may obtain a copy of the License at
|
||||
#
|
||||
# http://www.apache.org/licenses/LICENSE-2.0
|
||||
#
|
||||
# Unless required by applicable law or agreed to in writing, software
|
||||
# distributed under the License is distributed on an "AS IS" BASIS,
|
||||
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||
# See the License for the specific language governing permissions and
|
||||
# limitations under the License.
|
||||
|
||||
import math
|
||||
import sys
|
||||
|
||||
|
|
BIN
logos/CJVT.png
Normal file
BIN
logos/CJVT.png
Normal file
Binary file not shown.
After Width: | Height: | Size: 76 KiB |
Before Width: | Height: | Size: 28 KiB After Width: | Height: | Size: 28 KiB |
3773
logos/FF.svg
Normal file
3773
logos/FF.svg
Normal file
File diff suppressed because it is too large
Load Diff
After Width: | Height: | Size: 314 KiB |
BIN
logos/FRI.png
Normal file
BIN
logos/FRI.png
Normal file
Binary file not shown.
After Width: | Height: | Size: 128 KiB |
Loading…
Reference in New Issue
Block a user