some changes on server

.gitignore

@@ -2,5 +2,5 @@
 *.pickle
 *.log
 
-data/kres_out/
+data/kres_out/*
 data/kres_example/

dockerfiles/python-java/Dockerfile

@@ -5,7 +5,8 @@ RUN apt-get install -y \
 vim \
 default-jdk \
 python3 \
-python3-pip
+python3-pip \
+sshfs
 
 RUN pip3 install lxml pandas sklearn
 

dockerfiles/python-java/Makefile

@@ -5,14 +5,16 @@ all: build run
 build:
 	docker build . -t $(IMAGE_NAME)
 
+
 run:
 	docker run \
-    	-it \
-	--user $(shell id -u):$(shell id -g) \
+    -it \
 	-v /home/${USER}:/home/${USER} \
+	--user $(shell id -u):$(shell id -g) \
 	-v /etc/passwd:/etc/passwd \
 	-v /etc/group:/etc/group \
-    	-v $(shell pwd)/../../:/cjvt-srl-tagging \
+    -v $(shell pwd)/../../:/cjvt-srl-tagging \
 	-w /cjvt-srl-tagging \
-    	python-java \
-    	/bin/bash
+	-v /home/kristjan/kres_mount:/kres_mount:ro \
+    python-java \
+    /bin/bash

parser/tei_to_dict.py

@@ -0,0 +1,15 @@
+#!/usr/bin/python3
+
+from lxml import etree
+
+def tei_to_dict(s_el):
+
+
+if __name__ == "__main__":
+    with open("/home/kristjan/kres_mount/kres_parsed/tei/F0025751.xml.parsed.xml") as f:
+        xmlstring = re.sub(' xmlns="[^"]+"', '', fp.read(), count=1)
+        xmlstring = xmlstring.replace(' xml:', ' ')
+        xml_tree = ElementTree.XML(xmlstring)
+
+
+

parser/test.py

@@ -0,0 +1,151 @@
+#!/usr/bin/python2
+
+from __future__ import print_function, unicode_literals, division
+import sys
+import os
+import re
+import pickle
+from pathlib import Path
+
+try:
+    from lxml import etree as ElementTree
+except ImportError:
+    import xml.etree.ElementTree as ElementTree
+
+
+# attributes
+ID_ATTR = "id"
+LEMMA_ATTR = "lemma"
+ANA_ATTR = "ana"
+
+
+# tags
+SENTENCE_TAG = 's'
+BIBL_TAG = 'bibl'
+PARAGRAPH_TAG = 'p'
+PC_TAG = 'pc'
+WORD_TAG = 'w'
+C_TAG = 'c'
+S_TAG = 'S'
+SEG_TAG = 'seg'
+
+
+class Sentence:
+    def __init__(self, sentence, s_id):
+        self.id = s_id
+        self.words = []
+        self.text = ""
+
+        for word in sentence:
+            self.handle_word(word)
+
+    def handle_word(self, word):
+        # handle space after
+        if word.tag == S_TAG:
+            assert(word.text is None)
+            self.text += ' '
+            return
+
+        # ASK am I handling this correctly?
+        elif word.tag == SEG_TAG:
+            for segword in word:
+                self.handle_word(segword)
+            return
+
+        # ASK handle unknown tags (are there others?)
+        elif word.tag not in (WORD_TAG, C_TAG):
+            return
+
+        # ID
+        idx = str(len(self.words) + 1)
+
+        # TOKEN
+        token = word.text
+
+        # LEMMA
+        if word.tag == WORD_TAG:
+            lemma = word.get(LEMMA_ATTR)
+            assert(lemma is not None)
+        else:
+            lemma = token
+
+        # XPOS
+        xpos = word.get('msd')
+        if word.tag == C_TAG:
+            xpos = "Z"
+        elif xpos in ("Gp-ppdzn", "Gp-spmzd"):
+            xpos = "N"
+        elif xpos is None:
+            print(self.id)
+
+        # save word entry
+        self.words.append(['F{}.{}'.format(self.id, idx), token, lemma, xpos])
+
+        # save for text
+        self.text += word.text
+
+
+    def to_conllu(self):
+        lines = []
+        # lines.append('# sent_id = ' + self.id)
+        # CONLLu does not like spaces at the end of # text
+        # lines.append('# text = ' + self.text.strip())
+        for word in self.words:
+            lines.append('\t'.join('_' if data is None else data for data in word))
+
+        return lines
+
+def convert_file(in_file, out_file):
+    print("Nalaganje xml: {}".format(in_file))
+    with open(str(in_file), 'r') as fp:
+        uni_str = fp.read().decode("utf-8")
+        xmlstring = re.sub(' xmlns="[^"]+"', '', uni_str, count=1)
+        xmlstring = xmlstring.replace(' xml:', ' ')
+        print(xmlstring[:1000])
+        xml_tree = ElementTree.XML(xmlstring)
+
+    print("Pretvarjanje TEI -> TSV-U ...")
+    lines = []
+
+    for pidx, paragraph in enumerate(xml_tree.iterfind('.//body/p')):
+        sidx = 1
+        for sentence in paragraph:
+            if sentence.tag != SENTENCE_TAG:
+                continue
+
+            sentence = Sentence(sentence, "{}.{}".format(pidx + 1, sidx))
+            lines.extend(sentence.to_conllu())
+            lines.append('') # ASK newline between sentences
+            sidx += 1
+
+    if len(lines) == 0:
+        raise RuntimeError("Nobenih stavkov najdenih")
+
+    print("Zapisovanje izhodne datoteke: {}".format(out_file))
+    with open(out_file, 'w') as fp:
+        for line in lines:
+            if sys.version_info < (3, 0):
+                line = line.encode('utf-8')
+            print(line, file=fp)
+
+
+if __name__ == "__main__":
+    """
+    Input: folder of TEI files, msds are encoded as msd="Z"
+    Ouput: just a folder
+    """
+	 
+    infile = "/home/kristjan/kres_mount/kres_parsed/tei/F0025751.xml.parsed.xml"
+    outfile = "test.out"
+    convert_file(infile, outfile)
+    sys.exit()
+
+    in_folder = sys.argv[1]
+    out_folder = sys.argv[2]
+    num_processes = int(sys.argv[3])
+
+    files = Path(in_folder).rglob("*.xml")
+    in_out = []
+    for filename in files:
+        out_file = out_folder + "/" + filename.name[:-4] + ".txt"
+        convert_file(filename, out_file)