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30 lines
627 B
30 lines
627 B
#!/bin/bash
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# parsing tools.cfg values
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IN_FOLDER="../$(sed -n -e 's/^\s*kres_tsv\s*=\s*//p' ../tools.cfg)"
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echo "input folder: $IN_FOLDER"
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OUT_FOLDER="../$(sed -n -e 's/^\s*kres_srl\s*=\s*//p' ../tools.cfg)"
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echo "output folder: $OUT_FOLDER"
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SUFFIX="srl.tsv"
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mkdir -p $OUT_FOLDER
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rm $OUT_FOLDER/*${SUFFIX} &> /dev/null
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for infile in $IN_FOLDER/*; do
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echo "Tagging: ${infile}"
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base=$(basename $infile | cut -d'.' -f1)
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outfile=${OUT_FOLDER}/${base}.${SUFFIX}
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# mate-tools tagger
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./scripts/parse_srl_only_mod.sh $infile $outfile
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if [ $? -eq 0 ]; then
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echo "Saved as ${outfile}"
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else
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echo "ERR"
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exit 1
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fi
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done
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